Factsheet for Solyc02g070510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53850.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G53850.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054523	Potato	cytosol	100.0	100.0
Solyc08g016510.2.1	Tomato	extracellular	98.73	98.73
KRH69234	Soybean	endoplasmic reticulum	97.47	97.47
KRH36037	Soybean	endoplasmic reticulum, nucleus	97.47	97.47
KRG90710	Soybean	peroxisome	97.47	97.47
GSMUA_Achr11P...	Banana	peroxisome	97.05	97.05
KRH31817	Soybean	cytosol	96.62	96.62
Os11t0615700-01	Rice	peroxisome	95.36	95.36
AT3G14290.1	Thale cress	cytosol	94.51	94.51
Zm00001d027688_P002	Maize	peroxisome	94.51	94.51
OQU93221	Sorghum	cytosol	94.51	94.51
EES10115	Sorghum	peroxisome	94.51	94.51
Bra030921.1-P	Field mustard	cytosol	94.51	94.51
HORVU4Hr1G040770.1	Barley	cytosol	94.09	94.09
AT1G53850.1	Thale cress	cytosol	94.09	94.09
TraesCS4A01G167300.1	Wheat	peroxisome	94.09	94.09
TraesCS5B01G114000.1	Wheat	golgi, plastid, unclear	93.67	93.67
TraesCS4D01G157700.1	Wheat	peroxisome	93.67	93.67
TraesCS4B01G151700.1	Wheat	golgi, unclear	93.67	93.67
CDY08208	Canola	peroxisome	93.25	90.57
CDY51800	Canola	peroxisome	93.25	88.4
TraesCS5D01G121300.1	Wheat	peroxisome	86.92	86.92
TraesCS5A01G109000.1	Wheat	peroxisome	70.46	86.08
CDY02493	Canola	mitochondrion	94.51	80.0
CDY25683	Canola	cytosol, plastid	94.51	79.15
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	96.62	78.16
Zm00001d048403_P001	Maize	extracellular	94.09	76.11
Solyc01g111460.2.1	Tomato	cytosol	21.52	39.84
Solyc02g081700.1.1	Tomato	extracellular	40.93	39.11
Solyc01g111450.2.1	Tomato	plastid	37.97	36.14
Solyc10g008010.2.1	Tomato	extracellular, plastid	32.91	33.19
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	32.49	32.77
Solyc12g009140.1.1	Tomato	extracellular	31.65	30.49
Solyc04g080590.2.1	Tomato	extracellular	37.13	29.73
Solyc10g081130.1.1	Tomato	extracellular, plastid	29.11	27.71
Solyc10g077030.1.1	Tomato	extracellular	29.11	27.71

Protein Annotations

MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0043161
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:K4B832	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF14	InterPro:Proteasome_alpha-type
InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc02g070510.2
EnsemblPlants:Solyc02g070510.2.1	UniParc:UPI0002768852	:	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4B832]

Coordinates

chr2:+:40237421..40244486

Molecular Weight (calculated)

26099.8 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.269

Length

237 amino acids

Sequence
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGL KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DEHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGDEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQYNKDLTLK EAETIALSIL
201: KQVMEEKVTP NNVDIARVSP TYHLYSPSEV EEVISRL

Best Arabidopsis Sequence Match ( AT3G14290.1 )
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDITLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVISRL

Arabidopsis Description

PAE2Proteasome subunit alpha type-5-B [Source:UniProtKB/Swiss-Prot;Acc:Q42134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.