Factsheet for Solyc04g080590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009588	Potato	cytosol	91.22	98.54
VIT_18s0001g12760.t01	Wine grape	cytosol	79.73	83.1
KRH05846	Soybean	cytosol, nucleus	76.69	79.93
KRH38836	Soybean	cytosol, nucleus	76.69	79.65
CDY21248	Canola	cytosol	37.5	79.29
KRH15173	Soybean	cytosol, nucleus	76.69	78.82
Bra035332.1-P	Field mustard	cytosol	71.96	78.6
CDY02422	Canola	cytosol	71.96	78.6
CDX71518	Canola	cytosol	71.28	77.86
CDY52371	Canola	cytosol	72.3	77.82
Bra014068.1-P	Field mustard	cytosol	70.95	77.78
CDX95156	Canola	cytosol	72.64	77.62
Bra027456.1-P	Field mustard	cytosol	71.96	77.45
CDY17035	Canola	cytosol	71.28	77.29
CDY47593	Canola	cytosol	70.95	76.92
AT1G47250.1	Thale cress	cytosol	71.62	76.53
AT5G42790.1	Thale cress	cytosol	71.28	75.9
GSMUA_Achr10P...	Banana	cytosol	67.91	75.85
Os02t0133800-01	Rice	plastid	64.53	70.74
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	64.86	70.07
KRH20407	Soybean	cytosol	36.15	69.93
EES04466	Sorghum	cytosol	62.84	68.89
HORVU6Hr1G017500.1	Barley	cytosol	65.2	67.01
TraesCS6A01G097800.1	Wheat	unclear	64.53	66.32
TraesCS6B01G126000.1	Wheat	cytosol	64.53	66.09
TraesCS6D01G084800.1	Wheat	golgi	64.19	65.97
Solyc02g070510.2.1	Tomato	nucleus	29.73	37.13
Solyc08g016510.2.1	Tomato	extracellular	29.73	37.13
Solyc01g111450.2.1	Tomato	plastid	29.39	34.94
Solyc02g081700.1.1	Tomato	extracellular	29.05	34.68
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	27.03	34.04
Solyc10g008010.2.1	Tomato	extracellular, plastid	26.69	33.62
Solyc12g009140.1.1	Tomato	extracellular	27.7	33.33
Solyc01g111460.2.1	Tomato	cytosol	14.19	32.81
Solyc10g077030.1.1	Tomato	extracellular	25.0	29.72
Solyc10g081130.1.1	Tomato	extracellular, plastid	24.66	29.32

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	UniProt:K4BVD8	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc04g080590.2	EnsemblPlants:Solyc04g080590.2.1
MEROPS:T01.976	UniParc:UPI0002765A78	SEG:seg	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4BVD8]

Coordinates

chr4:-:64701655..64705978

Molecular Weight (calculated)

32442.3 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.331

Length

296 amino acids

Sequence
(BLAST)

001: MFRKRKGSSK AFTLQTPLKG REMFRNQYDT DVTTWSPAGR LFQVEYAMEA VKQGSAAIGL RSKTHVILAS VNKANSELSS HQKKIFKVDD HIGVAIAGLT
101: ADGRVLSRYM RTECINYSYS YESPLPVGRL VVQLADKAQV CTQRSWKRPY GVGLLVGGLD ESGAHLYYNC PSGNYFEYQA FAIGSRSQAA KTYLERKFET
201: FMDSSRESLL KDALFALRET LQGEKLTSSN CTVAVVGVGE AFHTLDKETI QALINEFEIA GEDAPAEVPE EAATDEPAAP EEGAAPADQG AAPMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.