Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035332.1-P | Field mustard | cytosol | 89.29 | 46.13 |
| CDY02422 | Canola | cytosol | 89.29 | 46.13 |
| CDY52371 | Canola | cytosol | 89.29 | 45.45 |
| CDX71518 | Canola | cytosol | 87.86 | 45.39 |
| CDX95156 | Canola | cytosol | 89.29 | 45.13 |
| CDY17035 | Canola | cytosol | 86.43 | 44.32 |
| CDY47593 | Canola | cytosol | 86.43 | 44.32 |
| AT5G42790.1 | Thale cress | cytosol | 87.86 | 44.24 |
| PGSC0003DMT400009588 | Potato | cytosol | 79.29 | 40.51 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 82.14 | 40.49 |
| GSMUA_Achr10P... | Banana | cytosol | 76.43 | 40.38 |
| PGSC0003DMT400039976 | Potato | cytosol | 78.57 | 40.29 |
| KRH05846 | Soybean | cytosol, nucleus | 80.71 | 39.79 |
| KRH38836 | Soybean | cytosol, nucleus | 80.71 | 39.65 |
| KRH15173 | Soybean | cytosol, nucleus | 80.71 | 39.24 |
| Solyc04g080590.2.1 | Tomato | extracellular | 79.29 | 37.5 |
| Os02t0133800-01 | Rice | plastid | 68.57 | 35.56 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 68.57 | 35.04 |
| EES04466 | Sorghum | cytosol | 67.14 | 34.81 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 67.14 | 32.64 |
| TraesCS6D01G084800.1 | Wheat | golgi | 67.14 | 32.64 |
| TraesCS6A01G097800.1 | Wheat | unclear | 67.14 | 32.64 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 67.14 | 32.53 |
| CDY08208 | Canola | peroxisome | 41.43 | 23.77 |
| CDY51800 | Canola | peroxisome | 41.43 | 23.2 |
| CDY02493 | Canola | mitochondrion | 42.86 | 21.43 |
| CDY25683 | Canola | cytosol, plastid | 42.86 | 21.2 |
| CDX77988 | Canola | cytosol, extracellular | 37.14 | 20.8 |
| CDX73737 | Canola | cytosol, extracellular | 37.14 | 20.8 |
| CDX90655 | Canola | cytosol | 36.43 | 20.4 |
| CDY29009 | Canola | cytosol | 36.43 | 20.4 |
| CDY39501 | Canola | cytosol, mitochondrion | 29.29 | 20.4 |
| CDY19309 | Canola | extracellular | 29.29 | 20.4 |
| CDX79306 | Canola | cytosol | 33.57 | 20.0 |
| CDY26894 | Canola | cytosol | 33.57 | 20.0 |
| CDY22253 | Canola | cytosol | 33.57 | 20.0 |
| CDX68003 | Canola | cytosol, extracellular | 33.57 | 20.0 |
| CDY50408 | Canola | cytosol, extracellular | 33.57 | 19.26 |
| CDY69258 | Canola | cytosol, mitochondrion | 28.57 | 19.23 |
| CDY33398 | Canola | cytosol, extracellular | 33.57 | 19.11 |
| CDY18045 | Canola | cytosol | 33.57 | 19.11 |
| CDY66240 | Canola | extracellular | 26.43 | 18.23 |
| CDX93103 | Canola | cytosol | 33.57 | 17.87 |
| CDX77059 | Canola | cytosol | 30.71 | 17.27 |
| CDY48190 | Canola | cytosol | 30.71 | 17.27 |
| CDX71476 | Canola | cytosol | 30.71 | 17.27 |
| CDY04473 | Canola | cytosol | 30.71 | 17.27 |
| CDY37382 | Canola | cytosol | 23.57 | 16.42 |
| CDX88517 | Canola | cytosol | 33.57 | 15.31 |
| CDX81411 | Canola | mitochondrion, plastid | 30.0 | 14.84 |
| CDX87400 | Canola | extracellular | 33.57 | 14.69 |
| KRH20407 | Soybean | cytosol | 5.71 | 5.23 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | GO:A0A078G938 | UniProt:A0A078G938 | EnsemblPlants:CDY21248 | ProteinID:CDY21248 |
| ProteinID:CDY21248.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 |
| GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00015544001 |
| InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b |
| SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0004EF07F6 | : | : | : |
Description
BnaC02g28750DProteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A078G938]
Coordinates
chrLK032118:+:273949..275851
Molecular Weight (calculated)
15882.3 Da
IEP (calculated)
8.809
GRAVY (calculated)
0.022
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPTCRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRP EAINHSFTYE
101: SPLPVGRLVV HLADKAQLSH YFSLMLFYNL PILMCYIHFT
101: SPLPVGRLVV HLADKAQLSH YFSLMLFYNL PILMCYIHFT
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
Arabidopsis Description
PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.