CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX70996
CDX88802
CDX92367
CDX98843
CDY04092
CDY04950
CDY17662
CDY36236
CDY52149
CDY64837
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	CDY04092	AT2G01570.1	21798944
AT3G51260.1	CDY17662	AT2G01570.1	21798944
AT3G51260.1	CDY36236	AT2G01570.1	21798944
AT3G51260.1	CDY64837	AT2G01570.1	21798944
AT3G51260.1	CDX70151	AT5G05410.1	18552202
AT3G51260.1	CDX98843	AT5G05410.1	18552202
AT3G51260.1	CDY04950	AT5G05410.1	18552202
AT3G51260.1	CDY52149	AT5G05410.1	18552202
AT3G51260.1	CDX70996	AT5G22310.1	21798944
AT3G51260.1	CDX88802	AT5G22310.1	21798944
AT3G51260.1	CDX92367	AT5G22310.1	21798944
AT3G51260.1	CDY67997	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036824.1-P	Field mustard	cytosol	100.0	100.0
CDX73737	Canola	cytosol, extracellular	99.6	99.6
CDY29009	Canola	cytosol	98.0	98.0
CDX90655	Canola	cytosol	98.0	98.0
AT3G51260.1	Thale cress	cytosol	96.0	96.0
GSMUA_Achr2P03470_001	Banana	cytosol	92.4	92.77
Solyc01g111450.2.1	Tomato	plastid	91.6	91.97
PGSC0003DMT400015849	Potato	cytosol	91.6	91.97
KRH69759	Soybean	endoplasmic reticulum, nucleus	91.6	91.97
GSMUA_Achr11P...	Banana	cytosol	91.6	91.97
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	91.2	91.57
VIT_04s0023g03690.t01	Wine grape	cytosol	90.0	90.36
VIT_03s0038g02300.t01	Wine grape	cytosol	90.0	90.36
Zm00001d022629_P001	Maize	cytosol	88.8	89.16
Os09t0538200-01	Rice	cytosol, plastid	88.4	88.75
Os08t0548900-01	Rice	plastid	88.4	88.75
EER97100	Sorghum	cytosol	88.4	88.75
EES15231	Sorghum	cytosol	88.0	88.35
Zm00001d053217_P001	Maize	cytosol, extracellular	88.0	88.35
TraesCS7A01G272000.1	Wheat	cytosol	87.6	87.95
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	87.6	87.95
Zm00001d006235_P001	Maize	cytosol, extracellular	87.6	87.95
TraesCS7D01G272300.1	Wheat	cytosol	87.6	87.95
HORVU5Hr1G083350.1	Barley	cytosol	87.2	87.55
TraesCS5A01G329300.1	Wheat	cytosol	87.2	87.55
TraesCS5B01G329400.1	Wheat	cytosol	87.2	87.55
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	86.8	76.41
CDX81411	Canola	mitochondrion, plastid	70.4	62.19
CDY26894	Canola	cytosol	35.6	37.87
CDX68003	Canola	cytosol, extracellular	35.6	37.87
CDY22253	Canola	cytosol	35.6	37.87
CDX79306	Canola	cytosol	35.6	37.87
CDY21248	Canola	cytosol	20.8	37.14
CDY08208	Canola	peroxisome	35.6	36.48
CDY51800	Canola	peroxisome	35.6	35.6
CDY69258	Canola	cytosol, mitochondrion	29.2	35.1
CDY33398	Canola	cytosol, extracellular	34.0	34.55
CDY18045	Canola	cytosol	34.0	34.55
CDY50408	Canola	cytosol, extracellular	33.6	34.43
CDY66240	Canola	extracellular	26.8	33.0
CDY37382	Canola	cytosol	26.4	32.84
CDY19309	Canola	extracellular	26.0	32.34
CDY39501	Canola	cytosol, mitochondrion	26.0	32.34
CDX93103	Canola	cytosol	34.0	32.32
CDY02493	Canola	mitochondrion	35.6	31.79
CDY47593	Canola	cytosol	34.4	31.5
CDY17035	Canola	cytosol	34.4	31.5
CDY25683	Canola	cytosol, plastid	35.6	31.45
CDY02422	Canola	cytosol	33.2	30.63
CDX71518	Canola	cytosol	33.2	30.63
CDY52371	Canola	cytosol	33.6	30.55
CDX95156	Canola	cytosol	33.6	30.32
CDX88517	Canola	cytosol	35.6	28.99
CDX87400	Canola	extracellular	35.6	27.81
CDY04473	Canola	cytosol	27.2	27.31
CDY48190	Canola	cytosol	27.2	27.31
CDX77059	Canola	cytosol	27.2	27.31
CDX71476	Canola	cytosol	27.2	27.31

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	GO:A0A078CS49	EnsemblPlants:CDX77988	ProteinID:CDX77988	ProteinID:CDX77988.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSBRNA2T00129258001	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0002542C6D	SEG:seg	:

Description

BnaA09g31830D

Coordinates

chrLK031814:+:450084..451969

Molecular Weight (calculated)

27356.6 Da

IEP (calculated)

8.182

GRAVY (calculated)

-0.288

Length

250 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDTRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEVALM TREEGTLKQL EEAEIDAIVA EIEAEKAAAE AAKKAPSRET

Best Arabidopsis Sequence Match ( AT3G51260.2 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SAGQETVKLA IRALLEVVES
201: GGKNIEVAVM TREEEEEIDI IVAEIEAEKA AAEAAKKGPA KET

Arabidopsis Description

PAD1Proteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A178VPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.