Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G47250.1 | CDY17034 | AT1G47260.1 | 21798944 |
| AT1G47250.1 | CDY23649 | AT1G47260.1 | 21798944 |
| AT1G47250.1 | CDY47592 | AT1G47260.1 | 21798944 |
| AT1G47250.1 | CDY67628 | AT1G47260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17035 | Canola | cytosol | 99.27 | 99.27 |
| Bra014068.1-P | Field mustard | cytosol | 97.8 | 98.89 |
| AT1G47250.1 | Thale cress | cytosol | 94.51 | 93.14 |
| CDY52371 | Canola | cytosol | 93.77 | 93.09 |
| CDX95156 | Canola | cytosol | 94.14 | 92.78 |
| CDX71518 | Canola | cytosol | 91.58 | 92.25 |
| CDY02422 | Canola | cytosol | 91.21 | 91.88 |
| CDY21248 | Canola | cytosol | 44.32 | 86.43 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 80.59 | 77.46 |
| KRH38836 | Soybean | cytosol, nucleus | 80.22 | 76.84 |
| KRH05846 | Soybean | cytosol, nucleus | 79.85 | 76.76 |
| PGSC0003DMT400009588 | Potato | cytosol | 76.92 | 76.64 |
| KRH15173 | Soybean | cytosol, nucleus | 80.22 | 76.04 |
| GSMUA_Achr10P... | Banana | cytosol | 73.63 | 75.85 |
| PGSC0003DMT400039976 | Potato | cytosol | 75.09 | 75.09 |
| Solyc04g080590.2.1 | Tomato | extracellular | 76.92 | 70.95 |
| Os02t0133800-01 | Rice | plastid | 69.23 | 70.0 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 68.13 | 67.88 |
| EES04466 | Sorghum | cytosol | 67.03 | 67.78 |
| KRH20407 | Soybean | cytosol | 37.73 | 67.32 |
| TraesCS6A01G097800.1 | Wheat | unclear | 68.86 | 65.28 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 68.86 | 65.05 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 68.5 | 64.93 |
| TraesCS6D01G084800.1 | Wheat | golgi | 68.13 | 64.58 |
| CDX68003 | Canola | cytosol, extracellular | 30.4 | 35.32 |
| CDX79306 | Canola | cytosol | 30.4 | 35.32 |
| CDY26894 | Canola | cytosol | 30.4 | 35.32 |
| CDY22253 | Canola | cytosol | 30.4 | 35.32 |
| CDY08208 | Canola | peroxisome | 30.77 | 34.43 |
| CDY29009 | Canola | cytosol | 31.5 | 34.4 |
| CDX73737 | Canola | cytosol, extracellular | 31.5 | 34.4 |
| CDX77988 | Canola | cytosol, extracellular | 31.5 | 34.4 |
| CDX90655 | Canola | cytosol | 31.5 | 34.4 |
| CDY51800 | Canola | peroxisome | 30.77 | 33.6 |
| CDY66240 | Canola | extracellular | 24.91 | 33.5 |
| CDY37382 | Canola | cytosol | 24.18 | 32.84 |
| CDY39501 | Canola | cytosol, mitochondrion | 23.44 | 31.84 |
| CDY19309 | Canola | extracellular | 23.44 | 31.84 |
| CDY69258 | Canola | cytosol, mitochondrion | 24.18 | 31.73 |
| CDY33398 | Canola | cytosol, extracellular | 28.57 | 31.71 |
| CDY18045 | Canola | cytosol | 28.57 | 31.71 |
| CDY50408 | Canola | cytosol, extracellular | 27.84 | 31.15 |
| CDY02493 | Canola | mitochondrion | 31.87 | 31.07 |
| CDY25683 | Canola | cytosol, plastid | 31.87 | 30.74 |
| CDY48190 | Canola | cytosol | 27.84 | 30.52 |
| CDX77059 | Canola | cytosol | 27.84 | 30.52 |
| CDX71476 | Canola | cytosol | 27.84 | 30.52 |
| CDY04473 | Canola | cytosol | 27.84 | 30.52 |
| CDX93103 | Canola | cytosol | 28.57 | 29.66 |
| CDX88517 | Canola | cytosol | 30.4 | 27.04 |
| CDX87400 | Canola | extracellular | 30.4 | 25.94 |
| CDX81411 | Canola | mitochondrion, plastid | 26.01 | 25.09 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | GO:A0A078IEM9 | UniProt:A0A078IEM9 | EnsemblPlants:CDY47593 | ProteinID:CDY47593 |
| ProteinID:CDY47593.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 |
| GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00087703001 |
| InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 |
| PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N |
| InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0004EDB3DD | SEG:seg | : |
Description
BnaC08g04630DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078IEM9]
Coordinates
chrLK032724:-:27262..29208
Molecular Weight (calculated)
30140.3 Da
IEP (calculated)
4.958
GRAVY (calculated)
-0.383
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLASVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV RLADKAQQVC TQRSWKRPYG VGLLVGGLDE SGAHLYYNCP SGNYFEYQAF AIGSRSQAAK TYLERRFKSF NESSREDLIK DAILAIRETL
201: QGETLKSSLC TVSVLGVDEP FHFLDQESIQ KVIDTFEKVP EEEEDGGEAE AEAAAAPAEQ GGAGDQDVAP MEM
101: SPLPVGRLVV RLADKAQQVC TQRSWKRPYG VGLLVGGLDE SGAHLYYNCP SGNYFEYQAF AIGSRSQAAK TYLERRFKSF NESSREDLIK DAILAIRETL
201: QGETLKSSLC TVSVLGVDEP FHFLDQESIQ KVIDTFEKVP EEEEDGGEAE AEAAAAPAEQ GGAGDQDVAP MEM
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
Arabidopsis Description
PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.