CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034316.1-P	Field mustard	cytosol	100.0	100.0
CDY04473	Canola	cytosol	100.0	100.0
CDX71476	Canola	cytosol	99.6	99.6
CDX77059	Canola	cytosol	99.2	99.2
VIT_08s0040g00410.t01	Wine grape	cytosol	89.96	89.96
PGSC0003DMT400072226	Potato	cytosol	89.96	89.96
GSMUA_Achr8P23960_001	Banana	cytosol	89.96	89.96
Solyc10g081130.1.1	Tomato	extracellular, plastid	89.56	89.56
Solyc10g077030.1.1	Tomato	extracellular	89.56	89.56
GSMUA_Achr4P10040_001	Banana	cytosol	89.56	89.56
PGSC0003DMT400018521	Potato	cytosol	89.16	89.16
KRG94269	Soybean	cytosol	85.94	85.94
EES01630	Sorghum	cytosol	69.88	85.29
Os01t0811100-01	Rice	cytosol	84.74	84.74
EER97635	Sorghum	cytosol	84.74	84.74
Os05t0490800-01	Rice	cytosol, plasma membrane	83.53	83.53
Zm00001d043137_P004	Maize	cytosol	85.94	83.27
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	83.13	83.13
TraesCS5B01G286900.1	Wheat	cytosol	83.13	83.13
TraesCS5D01G295300.1	Wheat	cytosol	83.13	83.13
TraesCS1B01G319100.1	Wheat	cytosol	82.33	82.33
HORVU1Hr1G068490.1	Barley	cytosol	82.33	82.33
HORVU0Hr1G001180.1	Barley	cytosol	82.33	82.33
TraesCS1D01G307800.1	Wheat	cytosol	82.33	82.33
TraesCS1A01G308400.1	Wheat	cytosol	81.93	81.93
Zm00001d012546_P002	Maize	cytosol	83.94	81.64
KRH57704	Soybean	cytosol, endoplasmic reticulum	81.12	77.39
Zm00001d022316_P001	Maize	cytosol	83.94	76.0
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	99.2	70.37
HORVU5Hr1G076600.1	Barley	plastid	69.48	66.8
Zm00001d007038_P001	Maize	cytosol	84.34	54.12
CDX79306	Canola	cytosol	30.12	31.91
CDX68003	Canola	cytosol, extracellular	30.12	31.91
CDY22253	Canola	cytosol	30.12	31.91
CDY26894	Canola	cytosol	30.12	31.91
CDY21248	Canola	cytosol	17.27	30.71
CDY69258	Canola	cytosol, mitochondrion	24.5	29.33
CDY66240	Canola	extracellular	23.29	28.57
CDY33398	Canola	cytosol, extracellular	28.11	28.46
CDY18045	Canola	cytosol	28.11	28.46
CDY37382	Canola	cytosol	22.89	28.36
CDY50408	Canola	cytosol, extracellular	27.71	28.28
CDY39501	Canola	cytosol, mitochondrion	22.49	27.86
CDY47593	Canola	cytosol	30.52	27.84
CDY17035	Canola	cytosol	30.52	27.84
CDY19309	Canola	extracellular	22.09	27.36
CDX73737	Canola	cytosol, extracellular	27.31	27.2
CDX90655	Canola	cytosol	27.31	27.2
CDX77988	Canola	cytosol, extracellular	27.31	27.2
CDY29009	Canola	cytosol	27.31	27.2
CDX71518	Canola	cytosol	29.32	26.94
CDY02422	Canola	cytosol	29.32	26.94
CDX93103	Canola	cytosol	28.11	26.62
CDY52371	Canola	cytosol	29.32	26.55
CDX95156	Canola	cytosol	29.32	26.35
CDY08208	Canola	peroxisome	25.7	26.23
CDY51800	Canola	peroxisome	25.7	25.6
CDX88517	Canola	cytosol	30.12	24.43
CDX87400	Canola	extracellular	30.12	23.44
CDY02493	Canola	mitochondrion	26.1	23.21
CDY25683	Canola	cytosol, plastid	26.1	22.97
CDX81411	Canola	mitochondrion, plastid	21.69	19.08

Protein Annotations

MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	GO:A0A078IBD0	UniProt:A0A078IBD0	EnsemblPlants:CDY48190	ProteinID:CDY48190
ProteinID:CDY48190.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00089005001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF103	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha3	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI00025452C5	SEG:seg	:

Description

BnaA04g15540DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078IBD0]

Coordinates

chrLK032758:-:106658..108671

Molecular Weight (calculated)

27364.9 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.224

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQIEYAAKA VDNSGTVVGI KCKDGIVMGV EKLIASKMML PGSNRRIHSV HRHAGMAVAG LAADGRQIVA RAKSEARSYE
101: SVYGDAVPVK ELSERVASYV HLCTLYWWLR PFGCGVILGG YDKDGPQLYM IEPSGISYRY FGAAIGKGKQ AAKTEIEKLK LSEMTCKEGV IEVAKIIYKL
201: HDEAKDKAFE LEMSWICEES KREHQKVPDD LLEEAKTAAK TALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.