CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0811100-01	Rice	cytosol	96.79	96.79
EES01630	Sorghum	cytosol	78.71	96.08
PGSC0003DMT400018521	Potato	cytosol	89.56	89.56
Solyc10g077030.1.1	Tomato	extracellular	89.16	89.16
Zm00001d022316_P001	Maize	cytosol	98.39	89.09
PGSC0003DMT400072226	Potato	cytosol	88.75	88.75
VIT_08s0040g00410.t01	Wine grape	cytosol	88.35	88.35
Solyc10g081130.1.1	Tomato	extracellular, plastid	87.95	87.95
GSMUA_Achr8P23960_001	Banana	cytosol	87.95	87.95
GSMUA_Achr4P10040_001	Banana	cytosol	87.55	87.55
KRG94269	Soybean	cytosol	86.35	86.35
Bra034316.1-P	Field mustard	cytosol	84.74	84.74
CDY04473	Canola	cytosol	84.74	84.74
CDY48190	Canola	cytosol	84.74	84.74
CDX71476	Canola	cytosol	84.34	84.34
CDX77059	Canola	cytosol	83.94	83.94
KRH57704	Soybean	cytosol, endoplasmic reticulum	80.72	77.01
Zm00001d007038_P001	Maize	cytosol	97.59	62.63
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	84.74	60.11
EES05472	Sorghum	cytosol	30.12	31.91
EER94765	Sorghum	cytosol	29.72	31.49
OQU75904	Sorghum	cytosol	31.33	31.2
EES15231	Sorghum	cytosol	30.12	30.12
EER97100	Sorghum	cytosol	29.72	29.72
OQU93221	Sorghum	cytosol	27.71	29.11
EES10115	Sorghum	peroxisome	27.71	29.11
EER92751	Sorghum	cytosol	28.11	28.46
EES04466	Sorghum	cytosol	30.12	27.78
KXG36677	Sorghum	plastid	25.3	22.99

Protein Annotations

MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	EntrezGene:8073097	UniProt:C5X3Y6	ncoils:Coil	EnsemblPlants:EER97635
ProteinID:EER97635	ProteinID:EER97635.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF101	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	EnsemblPlantsGene:SORBI_3002G394600	SUPFAM:SSF56235	unigene:Sbi.18572	UniParc:UPI0001A83475	RefSeq:XP_002461114.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74730208..74734894

Molecular Weight (calculated)

27238.6 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.169

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQVEYATKA VDNSGTVVGI KCKDGIVLGV EKLVASKMML EGSNRRIHSV HRHSGLAVAG LAADGRQIVS RTKLEAASYE
101: KVYGEAISVK ELADRVASYV HLCTLYWWLR PFGCGVILGG YDRDGPQLYM IEPSGVSYKY FGAALGKGRQ AAKTEIEKLK LSELTCREGI VEVAKIIYGV
201: HDEAKDKAFE LELSWICDES NRQHQKVPNE LLEQAKAAAQ AALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.