CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0387100-01	Rice	cytosol, plasma membrane	97.45	97.45
EES05472	Sorghum	cytosol	97.45	97.45
GSMUA_Achr5P19360_001	Banana	cytosol	91.49	91.49
AT1G16470.2	Thale cress	cytosol	91.06	91.06
Bra008402.1-P	Field mustard	cytosol	91.06	91.06
Bra035099.1-P	Field mustard	cytosol	91.06	91.06
CDX68003	Canola	cytosol, extracellular	91.06	91.06
CDX79306	Canola	cytosol	91.06	91.06
CDY22253	Canola	cytosol	91.06	91.06
CDY26894	Canola	cytosol	91.06	91.06
AT1G79210.1	Thale cress	cytosol	90.64	90.64
VIT_01s0011g01960.t01	Wine grape	cytosol	90.64	90.64
Solyc10g008010.2.1	Tomato	extracellular, plastid	90.64	90.64
PGSC0003DMT400027339	Potato	cytosol	90.64	90.64
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	90.21	90.21
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	90.21	90.21
PGSC0003DMT400052657	Potato	cytosol	89.79	89.79
KRH65961	Soybean	cytosol	89.79	89.79
GSMUA_Achr8P13980_001	Banana	cytosol	89.79	89.79
KRH13728	Soybean	cytosol	89.79	89.79
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	89.36	89.36
Bra003618.1-P	Field mustard	cytosol	91.06	87.35
CDX88517	Canola	cytosol	91.06	69.71
CDX87400	Canola	extracellular	91.06	66.88
EES15231	Sorghum	cytosol	38.3	36.14
EER97100	Sorghum	cytosol	37.87	35.74
EES10115	Sorghum	peroxisome	34.04	33.76
OQU93221	Sorghum	cytosol	34.04	33.76
OQU75904	Sorghum	cytosol	35.32	33.2
EES01630	Sorghum	cytosol	28.09	32.35
EER92751	Sorghum	cytosol	32.77	31.3
EER97635	Sorghum	cytosol	31.49	29.72
EES04466	Sorghum	cytosol	33.19	28.89
KXG36677	Sorghum	plastid	31.06	26.64

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	EntrezGene:8077121	UniProt:C5WXR7	EnsemblPlants:EER94765	ProteinID:EER94765
ProteinID:EER94765.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2
SMART:SM00948	EnsemblPlantsGene:SORBI_3001G352800	SUPFAM:SSF56235	unigene:Sbi.15904	UniParc:UPI0001A832F5	RefSeq:XP_002467767.1

Description

hypothetical protein

Coordinates

chr1:-:64189293..64195267

Molecular Weight (calculated)

25868.8 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.221

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDET SVQKIQALTP NIGVVYSGMG PDFRVLMRKS RKQAQQYYRL
101: YKETIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLIAGYD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGYE
201: GQISSNNIEI GIIRSDCEFR VLSPAEIKDF LEEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.