CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	99.15	99.15
KRH13728	Soybean	cytosol	98.72	98.72
KRH65961	Soybean	cytosol	98.3	98.3
VIT_01s0011g01960.t01	Wine grape	cytosol	96.17	96.17
Solyc10g008010.2.1	Tomato	extracellular, plastid	94.47	94.47
PGSC0003DMT400027339	Potato	cytosol	94.04	94.04
GSMUA_Achr5P19360_001	Banana	cytosol	94.04	94.04
GSMUA_Achr8P13980_001	Banana	cytosol	94.04	94.04
Bra008402.1-P	Field mustard	cytosol	93.62	93.62
Bra035099.1-P	Field mustard	cytosol	93.62	93.62
CDX68003	Canola	cytosol, extracellular	93.62	93.62
CDX79306	Canola	cytosol	93.62	93.62
CDY22253	Canola	cytosol	93.62	93.62
CDY26894	Canola	cytosol	93.62	93.62
AT1G16470.2	Thale cress	cytosol	93.62	93.62
AT1G79210.1	Thale cress	cytosol	92.77	92.77
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	92.34	92.34
PGSC0003DMT400052657	Potato	cytosol	92.34	92.34
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
Os03t0387100-01	Rice	cytosol, plasma membrane	90.64	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	90.64	90.64
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
EER94765	Sorghum	cytosol	90.21	90.21
Bra003618.1-P	Field mustard	cytosol	93.62	89.8
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	93.62	71.66
CDX87400	Canola	extracellular	93.62	68.75
Zm00001d017340_P002	Maize	cytosol	54.47	67.37
HORVU3Hr1G068630.1	Barley	mitochondrion	37.87	58.55
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
KRH69759	Soybean	endoplasmic reticulum, nucleus	38.72	36.55
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	38.72	36.55
KRH55422	Soybean	cytosol, endoplasmic reticulum	36.17	34.55
KRH26034	Soybean	nucleus	36.17	34.55
KRH76017	Soybean	cytosol	35.74	33.6
KRH65617	Soybean	nucleus	35.74	33.6
KRH00322	Soybean	cytosol	35.74	33.6
KRH49455	Soybean	endoplasmic reticulum, nucleus	35.74	33.6
KRG90710	Soybean	peroxisome	33.19	32.91
KRH36037	Soybean	endoplasmic reticulum, nucleus	33.19	32.91
KRH69234	Soybean	endoplasmic reticulum	33.19	32.91
KRH31817	Soybean	cytosol	32.77	32.49
KRG94269	Soybean	cytosol	32.77	30.92
KRH57704	Soybean	cytosol, endoplasmic reticulum	32.34	29.12
KRH05846	Soybean	cytosol, nucleus	34.04	28.17
KRH38836	Soybean	cytosol, nucleus	33.62	27.72
KRH15173	Soybean	cytosol, nucleus	33.62	27.43
KRH57899	Soybean	cytosol	14.47	22.22
KRH20407	Soybean	cytosol	14.04	21.57

Protein Annotations

EntrezGene:100807110	MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	EMBL:ACUP02000475	EnsemblPlantsGene:GLYMA_01G105500	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	UniProt:I1J717	InterPro:IPR023332	InterPro:IPR029055
ProteinID:KRH75738.1	EnsemblPlants:KRH75739	ProteinID:KRH75739	ProteinID:KRH75739.1	ProteinID:KRH75740.1	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16
InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235
MEROPS:T01.972	UniParc:UPI00023372E0	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:35644838..35653074

Molecular Weight (calculated)

25625.6 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.154

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQLLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYHRL
101: YKEPIPVTQL VREVAAVMQE FTQSGGVRPF GVSLLVAGFD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTD DMELDDAVHT SILTLKEGFE
201: GQISGKNIEI GIIGADKKFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.