Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008402.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY22253 | Canola | cytosol | 100.0 | 100.0 |
| CDY26894 | Canola | cytosol | 100.0 | 100.0 |
| AT1G79210.1 | Thale cress | cytosol | 99.15 | 99.15 |
| KRH43728 | Soybean | cytosol, endoplasmic reticulum, nucleus | 94.47 | 94.47 |
| Solyc10g008010.2.1 | Tomato | extracellular, plastid | 94.04 | 94.04 |
| KRH13728 | Soybean | cytosol | 94.04 | 94.04 |
| Solyc07g055080.2.1 | Tomato | cytosol, endoplasmic reticulum | 93.62 | 93.62 |
| PGSC0003DMT400052657 | Potato | cytosol | 93.62 | 93.62 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 93.62 | 93.62 |
| PGSC0003DMT400027339 | Potato | cytosol | 93.62 | 93.62 |
| KRH75739 | Soybean | cytosol, endoplasmic reticulum, nucleus | 93.62 | 93.62 |
| KRH65961 | Soybean | cytosol | 93.19 | 93.19 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 92.34 | 92.34 |
| EES05472 | Sorghum | cytosol | 91.06 | 91.06 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 91.06 | 91.06 |
| EER94765 | Sorghum | cytosol | 91.06 | 91.06 |
| TraesCS2A01G189400.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS2B01G217800.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS2D01G198400.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS3A01G285600.1 | Wheat | cytosol | 91.06 | 91.06 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 90.64 | 90.64 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 90.64 | 90.64 |
| TraesCS3D01G285400.1 | Wheat | cytosol | 90.64 | 90.64 |
| Os03t0387100-01 | Rice | cytosol, plasma membrane | 90.21 | 90.21 |
| Zm00001d017336_P007 | Maize | cytosol | 91.06 | 89.17 |
| Zm00001d017338_P006 | Maize | cytosol | 91.06 | 89.17 |
| TraesCS3B01G319500.1 | Wheat | cytosol | 91.06 | 88.43 |
| HORVU2Hr1G036390.6 | Barley | plastid | 87.23 | 75.93 |
| Zm00001d017340_P002 | Maize | cytosol | 55.32 | 68.42 |
| HORVU3Hr1G068630.1 | Barley | mitochondrion | 38.72 | 59.87 |
| Zm00001d051211_P008 | Maize | cytosol | 90.64 | 45.32 |
| AT5G66140.1 | Thale cress | cytosol | 38.3 | 36.0 |
| AT3G51260.1 | Thale cress | cytosol | 37.87 | 35.6 |
| AT5G35590.1 | Thale cress | cytosol | 35.74 | 34.15 |
| AT1G53850.1 | Thale cress | cytosol | 34.04 | 33.76 |
| AT3G14290.1 | Thale cress | cytosol | 33.62 | 33.33 |
| AT2G05840.1 | Thale cress | cytosol | 34.47 | 32.93 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 34.47 | 32.4 |
| AT5G42790.1 | Thale cress | cytosol | 35.74 | 30.22 |
| AT1G47250.1 | Thale cress | cytosol | 34.47 | 29.24 |
| AT4G15165.1 | Thale cress | cytosol | 24.26 | 27.4 |
| AT2G27020.2 | Thale cress | cytoskeleton, cytosol, nucleus | 31.49 | 21.08 |
Protein Annotations
| MapMan:19.2.6.1.1.2 | Gene3D:3.60.20.10 | EntrezGene:838217 | UniProt:A0A178WA13 | ProteinID:AAD34699.1 | ProteinID:AEE29457.1 |
| ProteinID:AEE29458.1 | EMBL:AF043520 | EMBL:AF332467 | EMBL:AF410305 | EMBL:AK317085 | EMBL:AK317410 |
| ArrayExpress:AT1G16470 | EnsemblPlantsGene:AT1G16470 | RefSeq:AT1G16470 | TAIR:AT1G16470 | RefSeq:AT1G16470-TAIR-G | EnsemblPlants:AT1G16470.2 |
| TAIR:AT1G16470.2 | EMBL:AY088628 | Unigene:At.396 | EMBL:BT000520 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0005840 | GO:GO:0006508 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0010043 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0022626 | GO:GO:0051603 |
| InterPro:IPR023332 | InterPro:IPR029055 | RefSeq:NP_001031057.1 | RefSeq:NP_173096.1 | InterPro:Ntn_hydrolases_N | UniProt:O23708 |
| ProteinID:OAP15289.1 | Symbol:PAB1 | PFAM:PF00227 | PFAM:PF10584 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF16 | InterPro:Proteasome_alpha-type |
| InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha2 | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0000001452 |
| EMBL:Y13176 | : | : | : | : | : |
Description
PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
Coordinates
chr1:+:5622838..5625643
Molecular Weight (calculated)
25702.7 Da
IEP (calculated)
5.391
GRAVY (calculated)
-0.196
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.