Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G16470.2 | Thale cress | cytosol | 100.0 | 100.0 |
| CDY26894 | Canola | cytosol | 100.0 | 100.0 |
| CDY22253 | Canola | cytosol | 100.0 | 100.0 |
| Bra035099.1-P | Field mustard | cytosol | 99.57 | 99.57 |
| Bra003618.1-P | Field mustard | cytosol | 99.15 | 95.1 |
| KRH43728 | Soybean | cytosol, endoplasmic reticulum, nucleus | 94.47 | 94.47 |
| KRH13728 | Soybean | cytosol | 94.04 | 94.04 |
| Solyc10g008010.2.1 | Tomato | extracellular, plastid | 94.04 | 94.04 |
| PGSC0003DMT400052657 | Potato | cytosol | 93.62 | 93.62 |
| PGSC0003DMT400027339 | Potato | cytosol | 93.62 | 93.62 |
| KRH75739 | Soybean | cytosol, endoplasmic reticulum, nucleus | 93.62 | 93.62 |
| Solyc07g055080.2.1 | Tomato | cytosol, endoplasmic reticulum | 93.62 | 93.62 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 93.62 | 93.62 |
| KRH65961 | Soybean | cytosol | 93.19 | 93.19 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 92.34 | 92.34 |
| EES05472 | Sorghum | cytosol | 91.06 | 91.06 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 91.06 | 91.06 |
| EER94765 | Sorghum | cytosol | 91.06 | 91.06 |
| TraesCS2A01G189400.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS2B01G217800.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS2D01G198400.1 | Wheat | cytosol | 91.06 | 91.06 |
| TraesCS3A01G285600.1 | Wheat | cytosol | 91.06 | 91.06 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 90.64 | 90.64 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 90.64 | 90.64 |
| TraesCS3D01G285400.1 | Wheat | cytosol | 90.64 | 90.64 |
| Os03t0387100-01 | Rice | cytosol, plasma membrane | 90.21 | 90.21 |
| Zm00001d017338_P006 | Maize | cytosol | 91.06 | 89.17 |
| Zm00001d017336_P007 | Maize | cytosol | 91.06 | 89.17 |
| TraesCS3B01G319500.1 | Wheat | cytosol | 91.06 | 88.43 |
| HORVU2Hr1G036390.6 | Barley | plastid | 87.23 | 75.93 |
| Zm00001d017340_P002 | Maize | cytosol | 55.32 | 68.42 |
| HORVU3Hr1G068630.1 | Barley | mitochondrion | 38.72 | 59.87 |
| Zm00001d051211_P008 | Maize | cytosol | 90.64 | 45.32 |
| Bra036824.1-P | Field mustard | cytosol | 37.87 | 35.6 |
| Bra012861.1-P | Field mustard | cytosol | 37.87 | 35.6 |
| Bra030921.1-P | Field mustard | cytosol | 33.62 | 33.33 |
| Bra013157.1-P | Field mustard | cytosol | 34.89 | 33.33 |
| Bra015170.1-P | Field mustard | cytosol | 34.04 | 32.52 |
| Bra031328.1-P | Field mustard | cytosol, mitochondrion | 34.47 | 32.4 |
| Bra023851.1-P | Field mustard | cytosol | 34.04 | 32.0 |
| Bra035332.1-P | Field mustard | cytosol | 35.74 | 31.0 |
| Bra027456.1-P | Field mustard | cytosol | 36.17 | 30.91 |
| Bra014068.1-P | Field mustard | cytosol | 35.32 | 30.74 |
| Bra034316.1-P | Field mustard | cytosol | 31.91 | 30.12 |
| Bra037085.1-P | Field mustard | cytosol | 34.89 | 26.62 |
Protein Annotations
| MapMan:19.2.6.1.1.2 | Gene3D:3.60.20.10 | EnsemblPlantsGene:Bra008402 | EnsemblPlants:Bra008402.1 | EnsemblPlants:Bra008402.1-P | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0005840 |
| GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0022626 |
| GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | UniProt:M4CW05 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 |
| PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF16 | InterPro:Proteasome_alpha-type |
| InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha2 | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0000001452 |
Description
AT1G16470 (E=5e-130) PAB1 | PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase
Coordinates
chrA02:-:15371263..15373101
Molecular Weight (calculated)
25702.7 Da
IEP (calculated)
5.391
GRAVY (calculated)
-0.196
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
Arabidopsis Description
PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.