Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G217800.1 | Wheat | cytosol | 97.11 | 100.0 |
| TraesCS3A01G285600.1 | Wheat | cytosol | 97.11 | 100.0 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 97.11 | 100.0 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 96.69 | 99.57 |
| TraesCS3D01G285400.1 | Wheat | cytosol | 96.69 | 99.57 |
| EES05472 | Sorghum | cytosol | 95.04 | 97.87 |
| Zm00001d017338_P006 | Maize | cytosol | 95.04 | 95.83 |
| Zm00001d017336_P007 | Maize | cytosol | 95.04 | 95.83 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 89.26 | 91.91 |
| Solyc10g008010.2.1 | Tomato | extracellular, plastid | 88.43 | 91.06 |
| PGSC0003DMT400027339 | Potato | cytosol | 88.43 | 91.06 |
| KRH75739 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.43 | 91.06 |
| KRH43728 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.43 | 91.06 |
| CDY26894 | Canola | cytosol | 88.43 | 91.06 |
| CDY22253 | Canola | cytosol | 88.43 | 91.06 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 88.43 | 91.06 |
| CDX79306 | Canola | cytosol | 88.43 | 91.06 |
| CDX68003 | Canola | cytosol, extracellular | 88.43 | 91.06 |
| Bra035099.1-P | Field mustard | cytosol | 88.43 | 91.06 |
| Bra008402.1-P | Field mustard | cytosol | 88.43 | 91.06 |
| AT1G16470.2 | Thale cress | cytosol | 88.43 | 91.06 |
| KRH13728 | Soybean | cytosol | 88.02 | 90.64 |
| KRH65961 | Soybean | cytosol | 88.02 | 90.64 |
| AT1G79210.1 | Thale cress | cytosol | 87.6 | 90.21 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 87.6 | 90.21 |
| PGSC0003DMT400052657 | Potato | cytosol | 86.36 | 88.94 |
| Solyc07g055080.2.1 | Tomato | cytosol, endoplasmic reticulum | 85.95 | 88.51 |
| Bra003618.1-P | Field mustard | cytosol | 88.43 | 87.35 |
| Zm00001d017340_P002 | Maize | cytosol | 58.26 | 74.21 |
| CDX88517 | Canola | cytosol | 88.43 | 69.71 |
| CDX87400 | Canola | extracellular | 88.43 | 66.88 |
| Zm00001d051211_P008 | Maize | cytosol | 94.63 | 48.72 |
| TraesCS5B01G329400.1 | Wheat | cytosol | 36.78 | 35.74 |
| TraesCS7B01G170000.1 | Wheat | cytosol, golgi, plastid, unclear | 36.78 | 35.74 |
| TraesCS7B01G030800.1 | Wheat | plastid | 35.54 | 34.4 |
| TraesCS5B01G114000.1 | Wheat | golgi, plastid, unclear | 33.06 | 33.76 |
| TraesCS4B01G151700.1 | Wheat | golgi, unclear | 32.23 | 32.91 |
| TraesCS1B01G319100.1 | Wheat | cytosol | 30.17 | 29.32 |
| TraesCS5B01G286900.1 | Wheat | cytosol | 30.17 | 29.32 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 31.41 | 26.3 |
| TraesCS2B01G196400.1 | Wheat | mitochondrion | 25.62 | 21.31 |
Protein Annotations
| MapMan:19.2.6.1.1.2 | Gene3D:3.60.20.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 |
| GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 |
| ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF16 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N |
| InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha2 | SMART:SM00948 | SUPFAM:SSF56235 | EnsemblPlantsGene:TraesCS3B01G319500 | EnsemblPlants:TraesCS3B01G319500.1 |
| TIGR:cd03750 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:514005894..514011328
Molecular Weight (calculated)
26612.7 Da
IEP (calculated)
5.132
GRAVY (calculated)
-0.180
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQSLTP NIGVVYSGMG PDFRVLVRKS RKQAQQYYRL
101: YKETIPVTQL VRETAAVMQE FTQSGYNLVC CSGVRPFGVS LLIAGYDDNG PQLYQVDPSG SYFSWKASAM GKNVSNAKTF LEKRYTEDME LDDAIHTAIL
201: TLKEGYEGQI SANNIEIGVI RADREFKVLT PAEIKDFLEE VE
101: YKETIPVTQL VRETAAVMQE FTQSGYNLVC CSGVRPFGVS LLIAGYDDNG PQLYQVDPSG SYFSWKASAM GKNVSNAKTF LEKRYTEDME LDDAIHTAIL
201: TLKEGYEGQI SANNIEIGVI RADREFKVLT PAEIKDFLEE VE
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
Arabidopsis Description
PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.