Factsheet for VIT_01s0011g01960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	97.02	97.02
KRH13728	Soybean	cytosol	96.6	96.6
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	96.17	96.17
KRH65961	Soybean	cytosol	95.32	95.32
PGSC0003DMT400052657	Potato	cytosol	94.89	94.89
PGSC0003DMT400027339	Potato	cytosol	94.47	94.47
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	94.04	94.04
Solyc10g008010.2.1	Tomato	extracellular, plastid	94.04	94.04
GSMUA_Achr5P19360_001	Banana	cytosol	94.04	94.04
AT1G79210.1	Thale cress	cytosol	93.62	93.62
AT1G16470.2	Thale cress	cytosol	93.62	93.62
GSMUA_Achr8P13980_001	Banana	cytosol	93.62	93.62
CDY26894	Canola	cytosol	93.62	93.62
CDY22253	Canola	cytosol	93.62	93.62
Bra035099.1-P	Field mustard	cytosol	93.62	93.62
Bra008402.1-P	Field mustard	cytosol	93.62	93.62
CDX79306	Canola	cytosol	93.19	93.19
CDX68003	Canola	cytosol, extracellular	93.19	93.19
EES05472	Sorghum	cytosol	91.49	91.49
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
Os02t0634900-01	Rice	cytosol, plasma membrane	91.06	91.06
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
Os03t0387100-01	Rice	cytosol, plasma membrane	91.06	91.06
EER94765	Sorghum	cytosol	90.64	90.64
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
Zm00001d017338_P006	Maize	cytosol	91.49	89.58
Zm00001d017336_P007	Maize	cytosol	91.49	89.58
Bra003618.1-P	Field mustard	cytosol	93.19	89.39
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	93.62	71.66
CDX87400	Canola	extracellular	93.62	68.75
Zm00001d017340_P002	Maize	cytosol	55.32	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	38.3	59.21
Zm00001d051211_P008	Maize	cytosol	91.06	45.53
VIT_04s0023g03690.t01	Wine grape	cytosol	38.3	36.14
VIT_03s0038g02300.t01	Wine grape	cytosol	38.3	36.14
VIT_09s0002g00980.t01	Wine grape	cytosol	36.17	34.55
VIT_10s0042g00070.t01	Wine grape	cytosol	36.17	34.0
VIT_08s0040g00410.t01	Wine grape	cytosol	31.06	29.32
VIT_18s0001g12760.t01	Wine grape	cytosol	33.62	27.82
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	33.62	26.96

Protein Annotations

EntrezGene:100262851	wikigene:100262851	MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	EMBL:AM457256	ProteinID:CAN70088
ProteinID:CAN70088.1	ProteinID:CBI27157	ProteinID:CBI27157.3	UniProt:D7T9I6	EMBL:FN595752	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	EntrezGene:LOC100262851
wikigene:LOC100262851	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.972	TIGR:TC54618	UniParc:UPI0001982968	ArrayExpress:VIT_01s0011g01960
EnsemblPlantsGene:VIT_01s0011g01960	EnsemblPlants:VIT_01s0011g01960.t01	unigene:Vvi.1634	RefSeq:XP_002278126	RefSeq:XP_002278126.1	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:D7T9I6]

Coordinates

chr1:+:1683597..1691104

Molecular Weight (calculated)

25585.5 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.179

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDEA SVQKIQVLTP NIGVVYSGMG PDSRVLVRKS RKQAEQYHRL
101: YKESIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGFD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTD DMELDDAVHT AILTLKEGFE
201: GQISSKNIEI GIIGTDRKFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G79210.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGTVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGTDKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB2Proteasome subunit alpha type-2-B [Source:UniProtKB/Swiss-Prot;Acc:Q8L4A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.