Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00322 | Soybean | cytosol | 95.2 | 95.2 |
| KRH76017 | Soybean | cytosol | 94.0 | 94.0 |
| KRH65617 | Soybean | nucleus | 94.0 | 94.0 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 94.0 | 94.0 |
| PGSC0003DMT400018852 | Potato | cytosol | 90.8 | 91.53 |
| Solyc02g081700.1.1 | Tomato | extracellular | 90.0 | 90.73 |
| Bra023851.1-P | Field mustard | cytosol | 90.4 | 90.4 |
| Bra031328.1-P | Field mustard | cytosol, mitochondrion | 89.6 | 89.6 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 89.2 | 89.2 |
| CDY19309 | Canola | extracellular | 71.6 | 89.05 |
| CDY39501 | Canola | cytosol, mitochondrion | 71.6 | 89.05 |
| CDY69258 | Canola | cytosol, mitochondrion | 74.0 | 88.94 |
| CDY66240 | Canola | extracellular | 72.0 | 88.67 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 80.8 | 88.21 |
| CDY37382 | Canola | cytosol | 70.8 | 88.06 |
| AT4G15165.1 | Thale cress | cytosol | 72.0 | 86.54 |
| GSMUA_Achr6P02000_001 | Banana | cytosol | 66.0 | 85.05 |
| TraesCS7B01G030800.1 | Wheat | plastid | 84.4 | 84.4 |
| TraesCS7A01G130500.1 | Wheat | plastid | 84.4 | 84.4 |
| TraesCS7D01G129900.1 | Wheat | cytosol | 84.4 | 84.4 |
| Zm00001d045194_P001 | Maize | extracellular | 84.4 | 84.4 |
| OQU75904 | Sorghum | cytosol | 83.6 | 83.6 |
| Zm00001d036319_P001 | Maize | cytosol | 83.6 | 83.6 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 88.0 | 82.4 |
| Os06t0177100-01 | Rice | plastid | 82.0 | 82.0 |
| Os06t0176000-01 | Rice | cytosol | 82.0 | 82.0 |
| Os06t0167600-01 | Rice | cytosol | 82.0 | 82.0 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 79.6 | 75.09 |
| Bra037085.1-P | Field mustard | cytosol | 90.0 | 73.05 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 34.0 | 36.17 |
| VIT_03s0038g02300.t01 | Wine grape | cytosol | 34.4 | 34.54 |
| VIT_04s0023g03690.t01 | Wine grape | cytosol | 34.4 | 34.54 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 32.0 | 32.52 |
| VIT_09s0002g00350.t01 | Wine grape | endoplasmic reticulum | 37.2 | 31.74 |
| VIT_08s0040g00410.t01 | Wine grape | cytosol | 31.2 | 31.33 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 35.2 | 30.99 |
Protein Annotations
| EntrezGene:100251448 | wikigene:100251448 | MapMan:19.2.6.1.1.3 | Gene3D:3.60.20.10 | UniProt:A5BSR0 | EMBL:AM469699 |
| ProteinID:CAN77245 | ProteinID:CAN77245.1 | ProteinID:CCB52075 | ProteinID:CCB52075.1 | EMBL:FN595766 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | EntrezGene:LOC100251448 |
| wikigene:LOC100251448 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF13 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha4 |
| SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.973 | TIGR:TC54380 | UniParc:UPI0001521B79 | ArrayExpress:VIT_10s0042g00070 |
| EnsemblPlantsGene:VIT_10s0042g00070 | EnsemblPlants:VIT_10s0042g00070.t01 | unigene:Vvi.8863 | RefSeq:XP_002266877 | RefSeq:XP_002266877.1 | RefSeq:XP_002266917 |
| RefSeq:XP_002266917.1 | SEG:seg | : | : | : | : |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A5BSR0]
Coordinates
chr10:+:12727854..12733290
Molecular Weight (calculated)
27263.5 Da
IEP (calculated)
7.177
GRAVY (calculated)
-0.185
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGTAIGILSK DGVVLVGEKK VTSKLLQTST STEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTYA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNFGFQLYMS DPSGNYGGWK AAAIGANNQA AQSMLKQDYK DDISREDAVQ LALKVLSKTM
201: DSTSLTSDKL ELAEVFLSAS GKVKYQVCSA DALSKLLVKF GVTQPAAETS
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNFGFQLYMS DPSGNYGGWK AAAIGANNQA AQSMLKQDYK DDISREDAVQ LALKVLSKTM
201: DSTSLTSDKL ELAEVFLSAS GKVKYQVCSA DALSKLLVKF GVTQPAAETS
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
Arabidopsis Description
PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.