Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
18260611
cytosol: 19685898 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0177100-01 | Rice | plastid | 99.6 | 99.6 |
| Os06t0176000-01 | Rice | cytosol | 99.6 | 99.6 |
| Zm00001d045194_P001 | Maize | extracellular | 96.4 | 96.4 |
| OQU75904 | Sorghum | cytosol | 96.0 | 96.0 |
| TraesCS7A01G130500.1 | Wheat | plastid | 95.6 | 95.6 |
| TraesCS7D01G129900.1 | Wheat | cytosol | 95.6 | 95.6 |
| TraesCS7B01G030800.1 | Wheat | plastid | 95.2 | 95.2 |
| Zm00001d036319_P001 | Maize | cytosol | 95.2 | 95.2 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 89.2 | 84.15 |
| CDY37382 | Canola | cytosol | 67.2 | 83.58 |
| Solyc02g081700.1.1 | Tomato | extracellular | 82.4 | 83.06 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 82.8 | 82.8 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 82.8 | 82.8 |
| PGSC0003DMT400049388 | Potato | cytosol | 82.4 | 82.73 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 75.6 | 82.53 |
| Bra023851.1-P | Field mustard | cytosol | 82.4 | 82.4 |
| KRH00322 | Soybean | cytosol | 82.4 | 82.4 |
| CDY66240 | Canola | extracellular | 66.8 | 82.27 |
| CDY69258 | Canola | cytosol, mitochondrion | 68.4 | 82.21 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 82.0 | 82.0 |
| KRH76017 | Soybean | cytosol | 82.0 | 82.0 |
| Bra031328.1-P | Field mustard | cytosol, mitochondrion | 82.0 | 82.0 |
| KRH65617 | Soybean | nucleus | 82.0 | 82.0 |
| CDY39501 | Canola | cytosol, mitochondrion | 65.2 | 81.09 |
| CDY19309 | Canola | extracellular | 64.8 | 80.6 |
| GSMUA_Achr6P02000_001 | Banana | cytosol | 62.4 | 80.41 |
| AT4G15165.1 | Thale cress | cytosol | 66.0 | 79.33 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 82.4 | 77.15 |
| Bra037085.1-P | Field mustard | cytosol | 83.6 | 67.86 |
| Os11t0615700-01 | Rice | peroxisome | 38.0 | 40.08 |
| Os03t0387100-01 | Rice | cytosol, plasma membrane | 33.6 | 35.74 |
| Os08t0548900-01 | Rice | plastid | 35.6 | 35.74 |
| Os09t0538200-01 | Rice | cytosol, plastid | 35.2 | 35.34 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 33.2 | 35.32 |
| Os01t0811100-01 | Rice | cytosol | 32.0 | 32.13 |
| Os05t0490800-01 | Rice | cytosol, plasma membrane | 31.2 | 31.33 |
| Os03t0180400-01 | Rice | cytosol | 30.8 | 31.3 |
| Os02t0133800-01 | Rice | plastid | 29.6 | 27.41 |
| Os07t0614100-01 | Rice | cytosol | 22.8 | 22.53 |
Protein Annotations
| MapMan:19.2.6.1.1.3 | Gene3D:3.60.20.10 | EntrezGene:4340253 | EMBL:AK067977 | ProteinID:BAA78755.1 | ProteinID:BAD67962.1 |
| ProteinID:BAF18836.1 | ProteinID:BAS96351.1 | ProteinID:EEE65162.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 |
| GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | EnsemblPlantsGene:Os06g0167600 | EnsemblPlants:Os06t0167600-01 |
| PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF13 |
| InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha4 | UniProt:Q5VRG3 | SMART:SM00948 |
| SUPFAM:SSF56235 | MEROPS:T01.973 | UniParc:UPI000016D87A | RefSeq:XP_015644466.1 | SEG:seg | : |
Description
Similar to Proteasome subunit alpha-3 (Fragment). (Os06t0167600-01)
Coordinates
chr6:+:3420507..3421462
Molecular Weight (calculated)
27027.3 Da
IEP (calculated)
6.933
GRAVY (calculated)
-0.158
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSALGVLAA DGVVLVGEKK VTSKLLQTSR SAEKMYKIDS HLACAVAGIM SDANILLNTA RLHAQRYALS
101: YQEPIPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYSGWK AAAVGANSQA AQSMLKQDYR DGLTREEAVA LALKVLSKTM
201: DSTSLTAEKL ELAEVFLQPG TGEVQYQVCS PEAMGKLLAK AGLSQPAPEA
101: YQEPIPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYSGWK AAAVGANSQA AQSMLKQDYR DGLTREEAVA LALKVLSKTM
201: DSTSLTAEKL ELAEVFLQPG TGEVQYQVCS PEAMGKLLAK AGLSQPAPEA
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS
Arabidopsis Description
PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.