Factsheet for Os03t0180400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 19685898
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0187000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	Os05t0187000-01	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	97.15	97.15
EER92751	Sorghum	cytosol	96.34	96.34
Zm00001d048271_P001	Maize	cytosol, extracellular	95.53	95.53
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	95.12	95.12
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	94.31	94.31
GSMUA_Achr10P...	Banana	cytosol	91.46	91.46
GSMUA_Achr6P11610_001	Banana	cytosol	91.46	91.46
Solyc12g009140.1.1	Tomato	extracellular	87.8	87.8
PGSC0003DMT400007520	Potato	cytosol, extracellular	87.8	87.8
KRH55422	Soybean	cytosol, endoplasmic reticulum	86.99	86.99
KRH26034	Soybean	nucleus	86.99	86.99
VIT_09s0002g00980.t01	Wine grape	cytosol	85.37	85.37
AT5G35590.1	Thale cress	cytosol	84.55	84.55
AT2G05840.1	Thale cress	cytosol	84.55	84.55
Bra015170.1-P	Field mustard	cytosol	83.74	83.74
CDY18045	Canola	cytosol	83.74	83.74
CDY33398	Canola	cytosol, extracellular	83.74	83.74
CDY50408	Canola	cytosol, extracellular	82.93	83.61
Bra013157.1-P	Field mustard	cytosol	83.33	83.33
HORVU4Hr1G076770.2	Barley	cytosol	94.72	82.62
CDX93103	Canola	cytosol	83.74	78.33
GSMUA_Achr3P02110_001	Banana	cytosol	36.18	64.96
Os07t0614100-01	Rice	cytosol	53.66	52.17
Os09t0538200-01	Rice	cytosol, plastid	35.77	35.34
Os08t0548900-01	Rice	plastid	35.37	34.94
Os02t0634900-01	Rice	cytosol, plasma membrane	32.52	34.04
Os03t0387100-01	Rice	cytosol, plasma membrane	31.71	33.19
Os11t0615700-01	Rice	peroxisome	31.3	32.49
Os06t0177100-01	Rice	plastid	31.3	30.8
Os06t0176000-01	Rice	cytosol	31.3	30.8
Os06t0167600-01	Rice	cytosol	31.3	30.8
Os02t0133800-01	Rice	plastid	32.52	29.63
Os05t0490800-01	Rice	cytosol, plasma membrane	28.86	28.51
Os01t0811100-01	Rice	cytosol	27.64	27.31

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	EntrezGene:4331828	ProteinID:AAN65435.1	ProteinID:AAO13479.1	EMBL:AB026558
ProteinID:ABF94305.1	EMBL:AK059929	EMBL:AK060026	EMBL:AK101031	ProteinID:BAF11076.1	ProteinID:BAS82617.1
ProteinID:EAZ25813.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	EnsemblPlantsGene:Os03g0180400	EnsemblPlants:Os03t0180400-01	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	UniProt:Q9LSU3	SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.971
UniParc:UPI00000016A7	RefSeq:XP_015630351.1	:	:	:	:

Description

20S proteasome alpha1 subunitProteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1). (Os03t0180400-01)

Coordinates

chr3:-:4210533..4212985

Molecular Weight (calculated)

27574.9 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.274

Length

246 amino acids

Sequence
(BLAST)

001: MSRGTGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGKDSVCV VTQKKVPDKL LDHTSVTHLF PITKYIGLLA TGLTADARSL VYQARNEAAE
101: FRFKWGYEMP VDVLAKWIAD KAQVYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDDPQFS YEETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKDDRVFRAL TTEEIDQHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.