Factsheet for Zm00001d048271_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019262_P001
Zm00001d035915_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	Zm00001d019262_P001	AT5G40580.1	21798944
AT2G05840.1	Zm00001d035915_P001	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	98.37	98.37
EER92751	Sorghum	cytosol	98.37	98.37
Os03t0180400-01	Rice	cytosol	95.53	95.53
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	94.31	94.31
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	94.31	94.31
GSMUA_Achr6P11610_001	Banana	cytosol	90.65	90.65
GSMUA_Achr10P...	Banana	cytosol	90.24	90.24
KRH26034	Soybean	nucleus	87.4	87.4
Solyc12g009140.1.1	Tomato	extracellular	86.99	86.99
PGSC0003DMT400007520	Potato	cytosol, extracellular	86.99	86.99
KRH55422	Soybean	cytosol, endoplasmic reticulum	86.59	86.59
VIT_09s0002g00980.t01	Wine grape	cytosol	85.37	85.37
AT5G35590.1	Thale cress	cytosol	84.96	84.96
AT2G05840.1	Thale cress	cytosol	84.96	84.96
CDY33398	Canola	cytosol, extracellular	84.15	84.15
CDY18045	Canola	cytosol	84.15	84.15
Bra015170.1-P	Field mustard	cytosol	84.15	84.15
CDY50408	Canola	cytosol, extracellular	82.93	83.61
Bra013157.1-P	Field mustard	cytosol	83.33	83.33
HORVU4Hr1G076770.2	Barley	cytosol	94.72	82.62
CDX93103	Canola	cytosol	83.74	78.33
GSMUA_Achr3P02110_001	Banana	cytosol	34.96	62.77
Zm00001d022131_P001	Maize	mitochondrion	55.69	43.08
Zm00001d022629_P001	Maize	cytosol	36.59	36.14
Zm00001d006235_P001	Maize	cytosol, extracellular	35.77	35.34
Zm00001d053217_P001	Maize	cytosol, extracellular	34.96	34.54
Zm00001d017338_P006	Maize	cytosol	32.11	32.92
Zm00001d017336_P007	Maize	cytosol	32.11	32.92
Zm00001d027688_P002	Maize	peroxisome	30.89	32.07
Zm00001d036319_P001	Maize	cytosol	32.52	32.0
Zm00001d045194_P001	Maize	extracellular	32.52	32.0
Zm00001d034938_P001	Maize	cytosol	12.2	30.0
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	32.11	28.83
Zm00001d012546_P002	Maize	cytosol	29.67	28.52
Zm00001d043137_P004	Maize	cytosol	28.46	27.24
Zm00001d022316_P001	Maize	cytosol	28.86	25.82
Zm00001d048403_P001	Maize	extracellular	30.49	25.6
Zm00001d017340_P002	Maize	cytosol	18.29	23.68
Zm00001d007038_P001	Maize	cytosol	28.86	18.3
Zm00001d051211_P008	Maize	cytosol	32.11	16.81

Protein Annotations

EntrezGene:100191154	MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	ProteinID:AQL09261.1	UniProt:B4F7U0	EMBL:BT033178
EMBL:BT055731	EMBL:EU956345	EMBL:EU968192	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.971	UniParc:UPI00017B5FE2
EnsemblPlantsGene:Zm00001d048271	EnsemblPlants:Zm00001d048271_P001	EnsemblPlants:Zm00001d048271_T001	:	:	:

Description

Proteasome subunit alpha type

Coordinates

chr9:+:153586355..153591283

Molecular Weight (calculated)

27488.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.244

Length

246 amino acids

Sequence
(BLAST)

001: MSRGTGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGADSVCV VTQKKVPDKL LDQTSVTHLF PITKYVGLLA TGLTADARSL VSQARNEAAE
101: FRFKWGYEMP VDVLAKWIAD KAQVYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDDPKFT YDETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKEERLFRVL TTEEIDQHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.