Factsheet for Zm00001d019262_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98255	Sorghum	cytosol	97.44	97.44
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	90.11	90.44
Os05t0187000-01	Rice	plastid	90.11	90.44
TraesCS1A01G122700.1	Wheat	cytosol	89.74	90.07
TraesCS1B01G141900.1	Wheat	cytosol	89.38	89.71
VIT_01s0137g00420.t01	Wine grape	cytosol	84.25	84.25
GSMUA_Achr9P20290_001	Banana	cytosol	84.25	84.25
KRH73888	Soybean	cytosol, nucleus	82.42	83.03
KRH14247	Soybean	cytosol	82.42	83.03
GSMUA_Achr7P03760_001	Banana	cytosol	82.42	82.12
AT5G40580.1	Thale cress	cytosol	79.12	78.83
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	50.18	77.84
Solyc04g024420.2.1	Tomato	cytosol, extracellular	76.92	76.92
HORVU1Hr1G028190.1	Barley	plastid	89.01	76.66
AT3G27430.2	Thale cress	cytosol	76.56	76.56
CDY34146	Canola	cytosol	76.19	76.19
Bra033011.1-P	Field mustard	cytosol	76.19	76.19
Solyc05g013820.2.1	Tomato	nucleus	67.77	74.3
CDX83694	Canola	golgi	78.39	64.65
CDY03969	Canola	extracellular	77.29	64.33
Zm00001d035915_P001	Maize	extracellular	95.97	61.07
PGSC0003DMT400043694	Potato	cytosol	72.89	60.3
CDY13711	Canola	cytosol	80.59	41.9
Bra025276.1-P	Field mustard	cytosol	79.49	39.38
Zm00001d036108_P001	Maize	cytosol	24.18	26.61
Zm00001d045403_P001	Maize	cytosol	23.44	25.91
Zm00001d045315_P003	Maize	cytosol	21.98	20.76

Protein Annotations

EntrezGene:100216834	MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	UniProt:B4FJY5	EMBL:BT037423	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONM52589.1	ProteinID:ONM52590.1
PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67
InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.A02
UniParc:UPI00017B69C7	EnsemblPlantsGene:Zm00001d019262	EnsemblPlants:Zm00001d019262_P001	EnsemblPlants:Zm00001d019262_T001	:	:

Description

Proteasome subunit beta type

Coordinates

chr7:-:24655394..24659033

Molecular Weight (calculated)

29307.1 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.137

Length

273 amino acids

Sequence
(BLAST)

001: MTCSMDLPAK GGFSFDLCRR NSMLEKNGLK LPGFRKTGTT IVGLVFQDGV VLGADTRATE GPIVADKNCE KIHFMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYATGR ESRVVTALTL LKSHLFRYQG HVSAALVLGG VDCTGPHLHT VYPHGSTDTL PFATMGSGSL AAMSVFESKY KEGLTREEGI QLVSEAICAG
201: IFNDLGSGSN VDVCVITKGK TEYLRNHQLP NPRTYVSSKG YSFTKGQTEV LSAKITHLKQ KVEVTEGGDA MEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.