Factsheet for PGSC0003DMT400043694

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013820.2.1	Tomato	nucleus	65.76	87.15
Bra033011.1-P	Field mustard	cytosol	67.58	81.69
CDY34146	Canola	cytosol	67.58	81.69
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	43.03	80.68
AT3G27430.2	Thale cress	cytosol	64.85	78.39
AT5G40580.1	Thale cress	cytosol	63.94	77.01
VIT_01s0137g00420.t01	Wine grape	cytosol	62.12	75.09
KRH14247	Soybean	cytosol	61.52	74.91
KRH73888	Soybean	cytosol, nucleus	61.52	74.91
GSMUA_Achr9P20290_001	Banana	cytosol	61.52	74.36
Os05t0187000-01	Rice	plastid	60.91	73.9
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	60.3	73.16
TraesCS1B01G141900.1	Wheat	cytosol	60.3	73.16
GSMUA_Achr7P03760_001	Banana	cytosol	60.61	72.99
Zm00001d019262_P001	Maize	cytosol	60.3	72.89
EER98255	Sorghum	cytosol	60.3	72.89
TraesCS1A01G122700.1	Wheat	cytosol	60.0	72.79
KXG19118	Sorghum	cytosol	59.39	71.79
CDY03969	Canola	extracellular	64.55	64.94
CDX83694	Canola	golgi	63.64	63.44
HORVU1Hr1G028190.1	Barley	plastid	59.7	62.15
Zm00001d035915_P001	Maize	extracellular	60.3	46.39
OQU86162	Sorghum	plastid	21.82	45.57
CDY13711	Canola	cytosol	63.64	40.0
Bra025276.1-P	Field mustard	cytosol	62.73	37.57
PGSC0003DMT400051560	Potato	cytosol	11.21	28.91
PGSC0003DMT400025311	Potato	cytosol	20.0	27.97
PGSC0003DMT400035591	Potato	cytosol	18.18	25.42
PGSC0003DMT400059981	Potato	cytosol	17.88	21.69
PGSC0003DMT400038738	Potato	cytosol	7.27	19.83

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:M1BF30	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400016969	PGSC:PGSC0003DMG400016969
EnsemblPlants:PGSC0003DMT400043694	PRINTS:PR00141	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0002963C7A	:	:

Description

Proteasome subunit beta type [Source:PGSC_GENE;Acc:PGSC0003DMG400016969]

Coordinates

chr5:-:10808146..10815934

Molecular Weight (calculated)

35534.7 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.145

Length

330 amino acids

Sequence
(BLAST)

001: MDVPQKGGFS FDLCRRNEML VSKGLRSPSF LKTGTTIVGL IFKTQNGPCL STLQICSAAG LEEVEARARK DSGKSFHIAS GGRCGEREIA DVLKISPIPF
101: IELNGTDGVI LGADTRATEG PIVADKNCEK IHYMAPNIYC CGAGTAADTE AVTDMVSSQL KLHRYHTGRE SRVVTSLTLL KSHLFSYQGH VSAALVLGGV
201: DVTGPHLHTI YPHGSTDTLP YATMGSGSLA AMAMFESKYR EGMNKDEGIK LVAEAILSGV FNDLGSGSNV DICVITKGNT EYLRNHLSPN PRTYPQKGYS
301: FSKKTEVLLT KITPLREIVQ VIEGGEAMEE

Best Arabidopsis Sequence Match ( AT3G27430.3 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIDGVILGAD TRATEGPIVA DKNCEKIHYM APNIYCCGAG TAADTEAVTD MVSSQLRLHR
101: YQTGRDSRVI TALTLLKKHL FSYQGHVSAA LVLGGVDITG PHLHTIYPHG STDTLPFATM GSGSLAAMSV FEAKYKEGLT RDEGIKLVAE SICSGIFNDL
201: GSGSNVDICV ITKGNKEYLR NYMEPNPRTY VSSKGYSFTK KTEVLLTKIT PLLERVEITE VGEAMEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.