Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- plastid 1
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P15820_001 | Banana | cytosol | 80.08 | 84.38 |
VIT_11s0065g00320.t01 | Wine grape | cytosol | 82.63 | 84.05 |
PGSC0003DMT400025311 | Potato | cytosol | 83.9 | 83.9 |
Bra010243.1-P | Field mustard | cytosol | 82.2 | 83.26 |
Bra011257.1-P | Field mustard | cytosol | 82.2 | 83.26 |
CDX68732 | Canola | cytosol | 82.2 | 83.26 |
CDY23291 | Canola | cytosol | 82.2 | 83.26 |
CDY28254 | Canola | cytosol | 82.2 | 83.26 |
CDY36450 | Canola | cytosol | 81.36 | 82.4 |
Bra024015.1-P | Field mustard | cytosol | 80.93 | 81.97 |
CDY13421 | Canola | cytosol | 80.93 | 81.97 |
CDX72300 | Canola | cytosol | 80.51 | 81.55 |
KRH61963 | Soybean | endoplasmic reticulum | 79.66 | 80.69 |
GSMUA_Achr5P24110_001 | Banana | cytosol | 79.66 | 80.69 |
AT4G31300.2 | Thale cress | cytosol | 79.66 | 80.34 |
KRH52623 | Soybean | cytosol, nucleus | 79.24 | 80.26 |
Os02t0770000-01 | Rice | cytosol | 76.27 | 73.17 |
TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 75.0 | 72.54 |
HORVU1Hr1G090810.1 | Barley | cytosol | 74.58 | 72.13 |
TraesCS1B01G443900.1 | Wheat | cytosol | 74.58 | 72.13 |
HORVU7Hr1G018660.1 | Barley | cytosol | 75.0 | 71.95 |
Os06t0139900-01 | Rice | cytosol, plasma membrane, plastid | 75.0 | 71.95 |
TraesCS1D01G421300.1 | Wheat | cytosol | 74.15 | 71.72 |
TraesCS7D01G078000.1 | Wheat | cytosol, golgi | 74.58 | 71.54 |
TraesCS7A01G083200.1 | Wheat | cytosol | 74.58 | 71.54 |
EES14124 | Sorghum | cytosol | 73.73 | 71.02 |
EER89160 | Sorghum | cytosol | 73.73 | 71.02 |
Zm00001d036108_P001 | Maize | cytosol | 74.15 | 70.56 |
Zm00001d045403_P001 | Maize | cytosol | 73.73 | 70.45 |
TraesCS4A01G381500.1 | Wheat | cytosol | 74.15 | 66.04 |
PGSC0003DMT400051560 | Potato | cytosol | 28.39 | 52.34 |
PGSC0003DMT400059981 | Potato | cytosol | 27.54 | 23.9 |
PGSC0003DMT400034355 | Potato | cytosol, mitochondrion | 14.83 | 19.89 |
PGSC0003DMT400043694 | Potato | cytosol | 25.42 | 18.18 |
PGSC0003DMT400038738 | Potato | cytosol | 9.32 | 18.18 |
Protein Annotations
EntrezGene:102587439 | MapMan:19.2.6.1.2.1 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 |
InterPro:IPR029055 | UniProt:M1B2I1 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | EnsemblPlantsGene:PGSC0003DMG400013685 | PGSC:PGSC0003DMG400013685 |
EnsemblPlants:PGSC0003DMT400035591 | PRINTS:PR00141 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF102 |
InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | MEROPS:T01.010 |
UniParc:UPI0002956101 | RefSeq:XP_006360655.1 | SEG:seg | : | : | : |
Description
Proteasome subunit beta type-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400013685]
Coordinates
chr5:-:43193344..43201077
Molecular Weight (calculated)
25364.1 Da
IEP (calculated)
5.258
GRAVY (calculated)
-0.087
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MENASVDVNQ PHSMGTTIIG VTYNGGVVLA ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSAADSQII SDYVRYFLHQ HTIQLGQPAT VKVAANLARL
101: LSYNNKDRLQ TGLIVGGWDK YEGGKIYGIP LGGAVLEQPF TIGGSGSTYL YGFFDQAWKE GMTQEEAEKL VVTAVSLAIA RDGASGGVVR TVTINKDGAT
201: RKFYPCDSLQ LWHEELEPVN SLLDVMSASS PVPMVS
101: LSYNNKDRLQ TGLIVGGWDK YEGGKIYGIP LGGAVLEQPF TIGGSGSTYL YGFFDQAWKE GMTQEEAEKL VVTAVSLAIA RDGASGGVVR TVTINKDGAT
201: RKFYPCDSLQ LWHEELEPVN SLLDVMSASS PVPMVS
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
Arabidopsis Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.