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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • vacuole 1
  • plastid 1
  • nucleus 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P15820_001 Banana cytosol 80.08 84.38
VIT_11s0065g00320.t01 Wine grape cytosol 82.63 84.05
PGSC0003DMT400025311 Potato cytosol 83.9 83.9
Bra010243.1-P Field mustard cytosol 82.2 83.26
Bra011257.1-P Field mustard cytosol 82.2 83.26
CDX68732 Canola cytosol 82.2 83.26
CDY23291 Canola cytosol 82.2 83.26
CDY28254 Canola cytosol 82.2 83.26
CDY36450 Canola cytosol 81.36 82.4
Bra024015.1-P Field mustard cytosol 80.93 81.97
CDY13421 Canola cytosol 80.93 81.97
CDX72300 Canola cytosol 80.51 81.55
KRH61963 Soybean endoplasmic reticulum 79.66 80.69
GSMUA_Achr5P24110_001 Banana cytosol 79.66 80.69
AT4G31300.2 Thale cress cytosol 79.66 80.34
KRH52623 Soybean cytosol, nucleus 79.24 80.26
Os02t0770000-01 Rice cytosol 76.27 73.17
TraesCS1A01G413900.1 Wheat cytosol, golgi 75.0 72.54
HORVU1Hr1G090810.1 Barley cytosol 74.58 72.13
TraesCS1B01G443900.1 Wheat cytosol 74.58 72.13
HORVU7Hr1G018660.1 Barley cytosol 75.0 71.95
Os06t0139900-01 Rice cytosol, plasma membrane, plastid 75.0 71.95
TraesCS1D01G421300.1 Wheat cytosol 74.15 71.72
TraesCS7D01G078000.1 Wheat cytosol, golgi 74.58 71.54
TraesCS7A01G083200.1 Wheat cytosol 74.58 71.54
EES14124 Sorghum cytosol 73.73 71.02
EER89160 Sorghum cytosol 73.73 71.02
Zm00001d036108_P001 Maize cytosol 74.15 70.56
Zm00001d045403_P001 Maize cytosol 73.73 70.45
TraesCS4A01G381500.1 Wheat cytosol 74.15 66.04
PGSC0003DMT400051560 Potato cytosol 28.39 52.34
PGSC0003DMT400059981 Potato cytosol 27.54 23.9
PGSC0003DMT400034355 Potato cytosol, mitochondrion 14.83 19.89
PGSC0003DMT400043694 Potato cytosol 25.42 18.18
PGSC0003DMT400038738 Potato cytosol 9.32 18.18
Protein Annotations
EntrezGene:102587439MapMan:19.2.6.1.2.1Gene3D:3.60.20.10GO:GO:0000502GO:GO:0003674GO:GO:0003824
GO:GO:0004175GO:GO:0004298GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005839GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233
GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0051603InterPro:IPR023333
InterPro:IPR029055UniProt:M1B2I1InterPro:Ntn_hydrolases_NPFAM:PF00227EnsemblPlantsGene:PGSC0003DMG400013685PGSC:PGSC0003DMG400013685
EnsemblPlants:PGSC0003DMT400035591PRINTS:PR00141ScanProsite:PS00854PFscan:PS51476PANTHER:PTHR11599PANTHER:PTHR11599:SF102
InterPro:Pept_T1A_subBInterPro:Proteasome_bsu_CSInterPro:Proteasome_suB-typeInterPro:Proteasome_sua/bSUPFAM:SSF56235MEROPS:T01.010
UniParc:UPI0002956101RefSeq:XP_006360655.1SEG:seg:::
Description
Proteasome subunit beta type-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400013685]
Coordinates
chr5:-:43193344..43201077
Molecular Weight (calculated)
25364.1 Da
IEP (calculated)
5.258
GRAVY (calculated)
-0.087
Length
236 amino acids
Sequence
(BLAST)
001: MENASVDVNQ PHSMGTTIIG VTYNGGVVLA ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSAADSQII SDYVRYFLHQ HTIQLGQPAT VKVAANLARL
101: LSYNNKDRLQ TGLIVGGWDK YEGGKIYGIP LGGAVLEQPF TIGGSGSTYL YGFFDQAWKE GMTQEEAEKL VVTAVSLAIA RDGASGGVVR TVTINKDGAT
201: RKFYPCDSLQ LWHEELEPVN SLLDVMSASS PVPMVS
Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
Arabidopsis Description
PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.