Factsheet for TraesCS1A01G413900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G443900.1	Wheat	cytosol	99.59	99.59
TraesCS1D01G421300.1	Wheat	cytosol	99.18	99.18
HORVU1Hr1G090810.1	Barley	cytosol	98.77	98.77
TraesCS7A01G083200.1	Wheat	cytosol	91.8	91.06
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	88.11	87.4
Os02t0770000-01	Rice	cytosol	85.66	84.96
TraesCS4A01G381500.1	Wheat	cytosol	92.21	84.91
Zm00001d036108_P001	Maize	cytosol	86.07	84.68
Zm00001d045403_P001	Maize	cytosol	85.66	84.62
EER89160	Sorghum	cytosol	84.43	84.08
EES14124	Sorghum	cytosol	84.02	83.67
GSMUA_Achr7P15820_001	Banana	cytosol	73.77	80.36
VIT_11s0065g00320.t01	Wine grape	cytosol	74.18	78.02
GSMUA_Achr5P24110_001	Banana	cytosol	74.18	77.68
VIT_04s0008g02850.t01	Wine grape	cytosol	70.08	76.68
KRH52623	Soybean	cytosol, nucleus	72.95	76.39
KRH61963	Soybean	endoplasmic reticulum	72.54	75.97
CDY36450	Canola	cytosol	72.54	75.97
Bra011257.1-P	Field mustard	cytosol	72.54	75.97
PGSC0003DMT400025311	Potato	cytosol	73.36	75.85
CDY28254	Canola	cytosol	72.13	75.54
CDY23291	Canola	cytosol	72.13	75.54
CDY13421	Canola	cytosol	72.13	75.54
CDX68732	Canola	cytosol	72.13	75.54
Bra024015.1-P	Field mustard	cytosol	72.13	75.54
Bra010243.1-P	Field mustard	cytosol	72.13	75.54
CDX72300	Canola	cytosol	71.72	75.11
PGSC0003DMT400035591	Potato	cytosol	72.54	75.0
Solyc07g016200.2.1	Tomato	extracellular, plastid	72.54	75.0
AT4G31300.2	Thale cress	cytosol	70.08	73.08
PGSC0003DMT400051560	Potato	cytosol	24.59	46.88
TraesCS1A01G122700.1	Wheat	cytosol	25.82	23.16
TraesCS7A01G110200.1	Wheat	cytosol	25.82	22.58

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS1A01G413900	EnsemblPlants:TraesCS1A01G413900.1	TIGR:cd03762	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:573503336..573506694

Molecular Weight (calculated)

26095.0 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.099

Length

244 amino acids

Sequence
(BLAST)

001: MDAASLMGPS SADAPTDGEH RMGTTIVGVC YDGGVVLAAD SRTSTGMYVA NRASDKISQL TDNVYVCRSG SAADTQIISD YVRYFLHQHT IQLGQPATVK
101: VASNLVRLLA YQNKSMLQAG MIVGGWDKYE GGQIYSVPLG GTILRQPFAI GGSGSSYLYG LMDHEWKEGM TQEEAEKFVV KVVSLAIARD GASGGVVRTV
201: TINEAGVKRS FHPGDKLPLW HEEMEPQNSL LDILAAGSSD AMVQ

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.