Factsheet for GSMUA_Achr5P24110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15820_001	Banana	cytosol	92.27	95.98
VIT_11s0065g00320.t01	Wine grape	cytosol	86.27	86.64
VIT_04s0008g02850.t01	Wine grape	cytosol	82.4	86.1
Bra011257.1-P	Field mustard	cytosol	84.12	84.12
KRH61963	Soybean	endoplasmic reticulum	84.12	84.12
Bra024015.1-P	Field mustard	cytosol	83.69	83.69
CDY13421	Canola	cytosol	83.69	83.69
KRH52623	Soybean	cytosol, nucleus	83.69	83.69
CDX72300	Canola	cytosol	83.26	83.26
CDY36450	Canola	cytosol	83.26	83.26
Bra010243.1-P	Field mustard	cytosol	81.97	81.97
CDY28254	Canola	cytosol	81.97	81.97
CDY23291	Canola	cytosol	81.97	81.97
CDX68732	Canola	cytosol	81.97	81.97
AT4G31300.2	Thale cress	cytosol	81.55	81.2
PGSC0003DMT400025311	Potato	cytosol	81.97	80.93
Solyc07g016200.2.1	Tomato	extracellular, plastid	80.69	79.66
PGSC0003DMT400035591	Potato	cytosol	80.69	79.66
EES14124	Sorghum	cytosol	81.12	77.14
EER89160	Sorghum	cytosol	81.12	77.14
Os02t0770000-01	Rice	cytosol	80.69	76.42
Zm00001d036108_P001	Maize	cytosol	80.69	75.81
Zm00001d045403_P001	Maize	cytosol	80.26	75.71
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	79.83	75.61
TraesCS1B01G443900.1	Wheat	cytosol	78.11	74.59
TraesCS1A01G413900.1	Wheat	cytosol, golgi	77.68	74.18
TraesCS1D01G421300.1	Wheat	cytosol	77.68	74.18
HORVU1Hr1G090810.1	Barley	cytosol	77.25	73.77
HORVU7Hr1G018660.1	Barley	cytosol	77.68	73.58
TraesCS7D01G078000.1	Wheat	cytosol, golgi	77.68	73.58
TraesCS7A01G083200.1	Wheat	cytosol	77.25	73.17
TraesCS4A01G381500.1	Wheat	cytosol	77.68	68.3
PGSC0003DMT400051560	Potato	cytosol	28.76	52.34
GSMUA_Achr9P20290_001	Banana	cytosol	27.9	23.81
GSMUA_Achr9P07850_001	Banana	cytosol	27.9	23.81
GSMUA_Achr7P03760_001	Banana	cytosol	27.9	23.72
GSMUA_Achr6P28520_001	Banana	extracellular	6.01	14.89
GSMUA_Achr1P13460_001	Banana	cytosol	6.44	10.56

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSMUA_Achr5G24110_001	EnsemblPlants:GSMUA_Achr5P24110_001
EnsemblPlants:GSMUA_Achr5T24110_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0T186	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF100	InterPro:Pept_T1A_subB
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000295A340	SEG:seg

Description

Proteasome subunit beta type-6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24110_001]

Coordinates

chr5:-:25580566..25585063

Molecular Weight (calculated)

24990.6 Da

IEP (calculated)

5.227

GRAVY (calculated)

-0.074

Length

233 amino acids

Sequence
(BLAST)

001: MDLDLSAPHS LGTTIIGVTY DGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYICRSGS AADSQVISDY VRYFLHQHTI QLGQPSTVKV AANLVRLLSY
101: QNKNMLQMGI IVGGWDKYEG GQIYSVPLGG TILKQPFAIG GSGSSYLYGF FDQAWKEGMS KDEAEKLVVK AVSLAIARDG ASGGVVRTVT INADGVTKNF
201: YSGDSLPLWH EELEPHNSLL DILSSSSPEP MST

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.