Factsheet for GSMUA_Achr6P28520_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06040_001
GSMUA_Achr3P10380_001
GSMUA_Achr5P23980_001
GSMUA_Achr9P18270_001
GSMUA_Achr9P28200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	GSMUA_Achr3P06040_001	AT1G10530.1	21798944
AT3G26340.1	GSMUA_Achr3P10380_001	AT1G10530.1	21798944
AT3G26340.1	GSMUA_Achr5P23980_001	AT1G10530.1	21798944
AT3G26340.1	GSMUA_Achr9P18270_001	AT1G10530.1	21798944
AT3G26340.1	GSMUA_Achr9P28200_001	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07850_001	Banana	cytosol	52.13	17.95
VIT_01s0010g02900.t01	Wine grape	cytosol	51.06	17.65
KRH63751	Soybean	cytosol	51.06	17.65
KRH54198	Soybean	nucleus	51.06	17.65
AT3G26340.1	Thale cress	cytosol	50.0	17.22
CDY16054	Canola	extracellular	50.0	17.15
CDY19402	Canola	cytosol	50.0	17.15
CDY21081	Canola	extracellular	50.0	17.15
CDY26610	Canola	cytosol	50.0	17.15
CDY34594	Canola	cytosol	50.0	17.15
CDX98014	Canola	extracellular	50.0	17.15
Bra019807.1-P	Field mustard	cytosol	50.0	17.15
AT1G13060.3	Thale cress	cytosol	51.06	16.11
Bra026938.1-P	Field mustard	cytosol	31.91	13.1
GSMUA_Achr1P13460_001	Banana	cytosol	14.89	9.86
GSMUA_Achr9P20290_001	Banana	cytosol	22.34	7.69
GSMUA_Achr7P03760_001	Banana	cytosol	22.34	7.66
GSMUA_Achr7P15820_001	Banana	cytosol	14.89	6.25
GSMUA_Achr5P24110_001	Banana	cytosol	14.89	6.01

Protein Annotations

EnsemblPlants:GSMUA_Achr6P28520_001	EnsemblPlants:GSMUA_Achr6T28520_001	EnsemblPlantsGene:GSMUA_Achr6G28520_001	Gene3D:3.60.20.10	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	SUPFAM:SSF56235	UniParc:UPI000296604F	UniProt:M0TAZ7	MapMan:35.1

Description

Proteasome subunit beta type-5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28520_001]

Coordinates

chr6:+:28877344..28880110

Molecular Weight (calculated)

10523.1 Da

IEP (calculated)

8.496

GRAVY (calculated)

0.187

Length

94 amino acids

Sequence
(BLAST)

1: MGRYICKHLV VMKIIEINPC MLSTIAGGVA DCQFWHRNEG IKILLCRCFK AISKHSLLFI EEWVLNSYRG MGPSVGTMTA GWNEKGPGLS YVDS

Best Arabidopsis Sequence Match ( AT1G13060.2 )
(BLAST)

001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISVSSLKN SSKNMHPFDI
101: VDFGRNTTSQ SVKKIIEINP YMLGTMAGGA ADCQFWHRNL GIKCRLHELA NKRRISVSGA SKLLANMLYS YRGMGLSVGT MIAGWDETGP GLYYVDNEGG
201: RLKGDRFSVG SGSPYAYGVL DSGYKYDMSV EEASELARRS IYHATFRDGA SGGVASVYHV GPEGWTKLSG DDVGELHYHY YPVAPATAEQ VMEEATAE

Arabidopsis Description

PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.