Factsheet for GSMUA_Achr9P20290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
plasma membrane 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03760_001	Banana	cytosol	95.6	95.26
Zm00001d019262_P001	Maize	cytosol	84.25	84.25
EER98255	Sorghum	cytosol	84.25	84.25
Os05t0187000-01	Rice	plastid	83.15	83.46
TraesCS1A01G122700.1	Wheat	cytosol	82.42	82.72
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	82.42	82.72
KXG19118	Sorghum	cytosol	82.42	82.42
VIT_01s0137g00420.t01	Wine grape	cytosol	82.42	82.42
TraesCS1B01G141900.1	Wheat	cytosol	82.05	82.35
KRH14247	Soybean	cytosol	79.49	80.07
KRH73888	Soybean	cytosol, nucleus	79.49	80.07
AT5G40580.1	Thale cress	cytosol	79.12	78.83
Solyc05g013820.2.1	Tomato	nucleus	71.06	77.91
Solyc04g024420.2.1	Tomato	cytosol, extracellular	77.29	77.29
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	49.82	77.27
AT3G27430.2	Thale cress	cytosol	76.56	76.56
CDY34146	Canola	cytosol	76.19	76.19
Bra033011.1-P	Field mustard	cytosol	76.19	76.19
HORVU1Hr1G028190.1	Barley	plastid	82.05	70.66
CDX83694	Canola	golgi	78.39	64.65
CDY03969	Canola	extracellular	77.29	64.33
PGSC0003DMT400043694	Potato	cytosol	74.36	61.52
OQU86162	Sorghum	plastid	32.6	56.33
Zm00001d035915_P001	Maize	extracellular	82.42	52.45
CDY13711	Canola	cytosol	78.02	40.57
Bra025276.1-P	Field mustard	cytosol	76.92	38.11
GSMUA_Achr7P15820_001	Banana	cytosol	23.08	28.12
GSMUA_Achr5P24110_001	Banana	cytosol	23.81	27.9
GSMUA_Achr9P07850_001	Banana	cytosol	23.44	23.44
GSMUA_Achr6P28520_001	Banana	extracellular	7.69	22.34
GSMUA_Achr1P13460_001	Banana	cytosol	7.69	14.79

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSMUA_Achr9G20290_001	EnsemblPlants:GSMUA_Achr9P20290_001
EnsemblPlants:GSMUA_Achr9T20290_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0U1Y8	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000294DBBE	:

Description

Proteasome subunit beta type-7-B [Source:GMGC_GENE;Acc:GSMUA_Achr9G20290_001]

Coordinates

chr9:-:24200112..24207042

Molecular Weight (calculated)

29368.3 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.070

Length

273 amino acids

Sequence
(BLAST)

001: MARLAADAPT KGGFSFDLCQ RNEMLLKKGM HLPTFRKTGT TIVGLVFQDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLQLHRYATG RESRVVTALT LLKSHLFSYQ GHVSAALVLG GVDITGPHLH TVYPHGSTDT LPFATMGSGS LAAMAVFESK FREGLTKEEG IKLVSEAICS
201: GIFNDLGSGS NVDVCVITKG HTEYLRNHQL PNPRTYVSSR GYNFVKGHTE VLSTKITPLK SKVEVAEVDA MEE

Best Arabidopsis Sequence Match ( AT5G40580.2 )
(BLAST)

001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE

Arabidopsis Description

PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.