Factsheet for Solyc05g013820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g024420.2.1	Tomato	cytosol, extracellular	83.13	75.82
AT3G27430.2	Thale cress	cytosol	79.12	72.16
AT5G40580.1	Thale cress	cytosol	79.12	71.9
KRH14247	Soybean	cytosol	77.51	71.22
KRH73888	Soybean	cytosol, nucleus	77.51	71.22
GSMUA_Achr9P20290_001	Banana	cytosol	77.91	71.06
Bra033011.1-P	Field mustard	cytosol	77.51	70.7
CDY34146	Canola	cytosol	77.51	70.7
GSMUA_Achr7P03760_001	Banana	cytosol	77.11	70.07
VIT_01s0137g00420.t01	Wine grape	cytosol	76.31	69.6
Os05t0187000-01	Rice	plastid	75.5	69.12
EER98255	Sorghum	cytosol	75.5	68.86
KXG19118	Sorghum	cytosol	74.3	67.77
Zm00001d019262_P001	Maize	cytosol	74.3	67.77
TraesCS1A01G122700.1	Wheat	cytosol	73.9	67.65
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	73.9	67.65
TraesCS1B01G141900.1	Wheat	cytosol	73.49	67.28
PGSC0003DMT400043694	Potato	cytosol	87.15	65.76
CDY03969	Canola	extracellular	78.71	59.76
CDX83694	Canola	golgi	77.51	58.31
HORVU1Hr1G028190.1	Barley	plastid	73.49	57.73
OQU86162	Sorghum	plastid	28.51	44.94
Zm00001d035915_P001	Maize	extracellular	73.49	42.66
CDY13711	Canola	cytosol	77.51	36.76
Bra025276.1-P	Field mustard	cytosol	76.31	34.48
Solyc07g016200.2.1	Tomato	extracellular, plastid	24.9	26.27
Solyc05g056160.2.1	Tomato	extracellular	24.1	21.98
Solyc03g063420.1.1	Tomato	mitochondrion	14.06	18.32
Solyc03g063450.1.1	Tomato	cytosol	10.04	11.52

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:K4BYA3	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:Solyc05g013820.2	EnsemblPlants:Solyc05g013820.2.1	MEROPS:T01.A02	UniParc:UPI00027660A3	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:K4BYA3]

Coordinates

chr5:-:7123897..7132363

Molecular Weight (calculated)

26772.2 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.074

Length

249 amino acids

Sequence
(BLAST)

001: MLVSKGLRSP SFLKTGTTIV GLIFKDGVIL GADTRATEGP IVADKNCEKI HYMAPNIYCC GAGTAADTEA VTDMVSSQLK LHRYHTGRES RVVTSLTLLK
101: SHLFSYQGHV SAALVLGGVD VTGPHLHTIY PHGSTDTLPY ATMGSGSLAA MAMFESKYRE GMSKDEGIKL VADAILSGVF NDLGSGSNVD ICVITKGNTE
201: YLRNHLSPNP RTYPQKGYSF SKKTEVLLTK ITPLREIVQV IEGGDAMEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.