CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98255	Sorghum	cytosol	96.7	96.7
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	89.38	89.71
TraesCS1A01G122700.1	Wheat	cytosol	89.01	89.34
Os05t0187000-01	Rice	plastid	89.01	89.34
TraesCS1B01G141900.1	Wheat	cytosol	88.64	88.97
KRH73888	Soybean	cytosol, nucleus	82.05	82.66
KRH14247	Soybean	cytosol	82.05	82.66
VIT_01s0137g00420.t01	Wine grape	cytosol	82.42	82.42
GSMUA_Achr9P20290_001	Banana	cytosol	82.42	82.42
GSMUA_Achr7P03760_001	Banana	cytosol	80.59	80.29
AT5G40580.1	Thale cress	cytosol	78.02	77.74
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	49.82	77.27
Solyc04g024420.2.1	Tomato	cytosol, extracellular	76.56	76.56
HORVU1Hr1G028190.1	Barley	plastid	88.28	76.03
AT3G27430.2	Thale cress	cytosol	75.46	75.46
CDY34146	Canola	cytosol	74.36	74.36
Bra033011.1-P	Field mustard	cytosol	74.36	74.36
Solyc05g013820.2.1	Tomato	nucleus	67.77	74.3
CDX83694	Canola	golgi	77.29	63.75
CDY03969	Canola	extracellular	76.19	63.41
Zm00001d035915_P001	Maize	extracellular	95.24	60.61
PGSC0003DMT400043694	Potato	cytosol	71.79	59.39
OQU86162	Sorghum	plastid	33.7	58.23
CDY13711	Canola	cytosol	79.12	41.14
Bra025276.1-P	Field mustard	cytosol	78.02	38.66
EES14124	Sorghum	cytosol	22.71	25.31
EER89160	Sorghum	cytosol	22.71	25.31
EER89220	Sorghum	cytosol	21.98	21.43

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	UniProt:A0A194YGP1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	EnsemblPlants:KXG19118	ProteinID:KXG19118	ProteinID:KXG19118.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3010G007400	SUPFAM:SSF56235	UniParc:UPI0007F2B593

Description

hypothetical protein

Coordinates

chr10:+:587175..590582

Molecular Weight (calculated)

29186.9 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.149

Length

273 amino acids

Sequence
(BLAST)

001: MTGSMDLPAK GGFDFDLCRR NNMLEKNGLK LPGFLKTGTT IVGLVFQDGV VLGADTRATE GPIVADKNCE KIHFMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYATGR ESRVVTALTL LKSHLFKYQG HVSAALVLGG VDCTGPHLHT VYPHGSTDTL PFATMGSGSL AAMSVFESKY KEGLTREDGI ELVSDAIRAG
201: IFNDLGSGSN VDVCVITKGK TEYLRNHQLP NPRTYASSKG FSFTKGQTEV LSTKITPLKQ KVEVAEGGDA MEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.