Factsheet for Os05t0187000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019262_P001	Maize	cytosol	90.44	90.11
EER98255	Sorghum	cytosol	90.07	89.74
KXG19118	Sorghum	cytosol	89.34	89.01
TraesCS1A01G122700.1	Wheat	cytosol	88.97	88.97
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	88.6	88.6
TraesCS1B01G141900.1	Wheat	cytosol	87.87	87.87
GSMUA_Achr9P20290_001	Banana	cytosol	83.46	83.15
KRH73888	Soybean	cytosol, nucleus	81.62	81.92
KRH14247	Soybean	cytosol	81.62	81.92
VIT_01s0137g00420.t01	Wine grape	cytosol	81.99	81.69
GSMUA_Achr7P03760_001	Banana	cytosol	81.62	81.02
AT5G40580.1	Thale cress	cytosol	79.41	78.83
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	50.74	78.41
Solyc04g024420.2.1	Tomato	cytosol, extracellular	76.84	76.56
AT3G27430.2	Thale cress	cytosol	76.84	76.56
CDY34146	Canola	cytosol	76.47	76.19
Bra033011.1-P	Field mustard	cytosol	76.47	76.19
Solyc05g013820.2.1	Tomato	nucleus	69.12	75.5
HORVU1Hr1G028190.1	Barley	plastid	87.87	75.39
CDX83694	Canola	golgi	78.68	64.65
CDY03969	Canola	extracellular	76.84	63.72
PGSC0003DMT400043694	Potato	cytosol	73.9	60.91
Zm00001d035915_P001	Maize	extracellular	89.34	56.64
CDY13711	Canola	cytosol	80.88	41.9
Bra025276.1-P	Field mustard	cytosol	79.78	39.38
Os02t0770000-01	Rice	cytosol	23.9	26.42
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	23.16	25.61
Os06t0153800-01	Rice	plasma membrane, plastid	21.32	20.94

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	EntrezGene:4338009	ProteinID:AAS86397.1	EMBL:AB026564	EMBL:AK103126
ProteinID:BAF16748.1	ProteinID:BAS92608.1	ProteinID:EEE62582.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	EnsemblPlantsGene:Os05g0187000	EnsemblPlants:Os05t0187000-01	PFAM:PF00227	PRINTS:PR00141
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	UniProt:Q9LST8	SUPFAM:SSF56235	MEROPS:T01.011	UniParc:UPI00000A247E
RefSeq:XP_015637452.1	:	:	:	:	:

Description

20S proteasome beta2 subunit, proteasome component PUP1Beta 2 subunit of 20S proteasome (20S proteasome beta subunit). (Os05t0187000-01);Similar to Proteasome subunit beta type 7-A. (Os05t0187000-02)

Coordinates

chr5:+:5333747..5336857

Molecular Weight (calculated)

28998.7 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.122

Length

272 amino acids

Sequence
(BLAST)

001: MAGATDLPPK GGFSYDNCAR NAMLVEKGLK MPGFLKTGTT IVGLVFQDGV VLGADTRATE GPIVADKNCE KIHYMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYATGR ESRVVTSLTL LKSHLFSYQG HVSAALVLGG VDVTGPHLHT VYPHGSTDTL PFATMGSGSL AAMSVFESKY KEGLTREEGI QLVAEAIRGG
201: IFNDLGSGSN VDVCVITKGK TEYLRNHQLP NPRTYVSSKG YNFTKGQTVV LSTKITQLKP KVEVTEGDAM EE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.