CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14247	Soybean	cytosol	100.0	100.0
AT5G40580.1	Thale cress	cytosol	84.13	83.21
VIT_01s0137g00420.t01	Wine grape	cytosol	83.39	82.78
Zm00001d019262_P001	Maize	cytosol	83.03	82.42
EER98255	Sorghum	cytosol	83.03	82.42
KXG19118	Sorghum	cytosol	82.66	82.05
Os05t0187000-01	Rice	plastid	81.92	81.62
TraesCS1A01G122700.1	Wheat	cytosol	80.81	80.51
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	80.81	80.51
TraesCS1B01G141900.1	Wheat	cytosol	80.44	80.15
AT3G27430.2	Thale cress	cytosol	80.07	79.49
GSMUA_Achr9P20290_001	Banana	cytosol	80.07	79.49
Bra033011.1-P	Field mustard	cytosol	79.34	78.75
CDY34146	Canola	cytosol	79.34	78.75
Solyc04g024420.2.1	Tomato	cytosol, extracellular	78.6	78.02
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	50.55	77.84
GSMUA_Achr7P03760_001	Banana	cytosol	78.6	77.74
Solyc05g013820.2.1	Tomato	nucleus	71.22	77.51
HORVU1Hr1G028190.1	Barley	plastid	80.07	68.45
CDX83694	Canola	golgi	81.55	66.77
CDY03969	Canola	extracellular	80.44	66.46
PGSC0003DMT400043694	Potato	cytosol	74.91	61.52
OQU86162	Sorghum	plastid	31.37	53.8
Zm00001d035915_P001	Maize	extracellular	81.92	51.75
CDY13711	Canola	cytosol	82.29	42.48
Bra025276.1-P	Field mustard	cytosol	81.18	39.93
KRH61963	Soybean	endoplasmic reticulum	24.72	28.76
KRH52623	Soybean	cytosol, nucleus	24.35	28.33
KRH63751	Soybean	cytosol	23.25	23.16
KRH54198	Soybean	nucleus	23.25	23.16

Protein Annotations

EntrezGene:100808133	EntrezGene:100819784	MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	EMBL:ACUP02001289	EMBL:ACUP02008495
EnsemblPlantsGene:GLYMA_02G299000	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	UniProt:I1JJI4	InterPro:IPR023333	InterPro:IPR029055
ProteinID:KRH14246.1	ProteinID:KRH14247.1	ProteinID:KRH14248.1	ProteinID:KRH14249.1	ProteinID:KRH14250.1	EnsemblPlants:KRH73888
ProteinID:KRH73888	ProteinID:KRH73888.1	ProteinID:KRH73889.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.A02	UniParc:UPI0001E7A3EE	:

Description

hypothetical protein

Coordinates

chr2:-:47611131..47614650

Molecular Weight (calculated)

29351.5 Da

IEP (calculated)

7.289

GRAVY (calculated)

-0.103

Length

271 amino acids

Sequence
(BLAST)

001: MSPSLDLPPK GGFSFDLCRR NAMLQNKGLK APTFLKTGTT IVGLVFQDGV ILGADTRATE GPIVADKNCE KIHYMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYHTGR ESRVVTALTL LKKHLFNYQG HVSAALVLGG VDITGPHLHT IYPHGSTDTL PFATMGSGSL AAMSVFESKY KESLSRDEGI KLVVEAICAG
201: IFNDLGSGSN VDVCVITKGH KEYLRNHLLP NPRTYVNPKG FDFPKKTEVL LTKITPLKEK VEVIEGDAME E

Best Arabidopsis Sequence Match ( AT5G40580.2 )
(BLAST)

001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE

Arabidopsis Description

PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.