Factsheet for VIT_01s0137g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019262_P001	Maize	cytosol	84.25	84.25
EER98255	Sorghum	cytosol	84.25	84.25
KRH73888	Soybean	cytosol, nucleus	82.78	83.39
KRH14247	Soybean	cytosol	82.78	83.39
KXG19118	Sorghum	cytosol	82.42	82.42
GSMUA_Achr9P20290_001	Banana	cytosol	82.42	82.42
Os05t0187000-01	Rice	plastid	81.69	81.99
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	52.75	81.82
Solyc04g024420.2.1	Tomato	cytosol, extracellular	81.69	81.69
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	80.95	81.25
TraesCS1A01G122700.1	Wheat	cytosol	80.95	81.25
AT5G40580.1	Thale cress	cytosol	80.95	80.66
GSMUA_Achr7P03760_001	Banana	cytosol	80.95	80.66
TraesCS1B01G141900.1	Wheat	cytosol	80.22	80.51
AT3G27430.2	Thale cress	cytosol	78.02	78.02
CDY34146	Canola	cytosol	77.29	77.29
Bra033011.1-P	Field mustard	cytosol	77.29	77.29
Solyc05g013820.2.1	Tomato	nucleus	69.6	76.31
HORVU1Hr1G028190.1	Barley	plastid	80.59	69.4
CDX83694	Canola	golgi	79.85	65.86
CDY03969	Canola	extracellular	78.75	65.55
PGSC0003DMT400043694	Potato	cytosol	75.09	62.12
OQU86162	Sorghum	plastid	31.14	53.8
Zm00001d035915_P001	Maize	extracellular	83.52	53.15
CDY13711	Canola	cytosol	82.78	43.05
Bra025276.1-P	Field mustard	cytosol	81.69	40.47
VIT_04s0008g02850.t01	Wine grape	cytosol	23.44	28.7
VIT_11s0065g00320.t01	Wine grape	cytosol	23.81	28.02
VIT_01s0010g02900.t01	Wine grape	cytosol	21.61	21.69

Protein Annotations

EntrezGene:100249199	wikigene:100249199	MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	ProteinID:CBI16820	ProteinID:CBI16820.3
UniProt:D7SME1	EMBL:FN594954	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
EntrezGene:LOC100249199	wikigene:LOC100249199	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.011	MEROPS:T01.A02	TIGR:TC68818	UniParc:UPI0001982B5F
ArrayExpress:VIT_01s0137g00420	EnsemblPlantsGene:VIT_01s0137g00420	EnsemblPlants:VIT_01s0137g00420.t01	unigene:Vvi.6659	RefSeq:XP_002285415	RefSeq:XP_002285415.1
RefSeq:XP_002285417	RefSeq:XP_002285417.2	:	:	:	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:D7SME1]

Coordinates

chr1:+:6948102..6954755

Molecular Weight (calculated)

29499.4 Da

IEP (calculated)

6.838

GRAVY (calculated)

-0.118

Length

273 amino acids

Sequence
(BLAST)

001: MSKAVVDVPP KGGFSFDLCR RNEMLSKKGV QTPPFRKTGT TIVGLVFQDG VILGADTRAT EGPIVCDKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLQLHRYHTG RESRVVTALT LLKSHLFSYQ GYVQAALVLG GVDCTGPHLH TIYPHGSTDT LPFATMGSGS LAAMAVFESK YHEGLTREEG INLVSEAICS
201: GIFNDLGSGS NVDVCVITKG HKEYLRNHQL PNPRTYVSAK GYSFPKPIEV LLTKVTPLKE KVEVIEGGDA MEE

Best Arabidopsis Sequence Match ( AT5G40580.2 )
(BLAST)

001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE

Arabidopsis Description

PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.