Factsheet for VIT_11s0065g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02850.t01	Wine grape	cytosol	86.21	89.69
GSMUA_Achr7P15820_001	Banana	cytosol	86.21	89.29
GSMUA_Achr5P24110_001	Banana	cytosol	86.64	86.27
PGSC0003DMT400025311	Potato	cytosol	84.91	83.47
PGSC0003DMT400035591	Potato	cytosol	84.05	82.63
Solyc07g016200.2.1	Tomato	extracellular, plastid	84.05	82.63
HORVU1Hr1G090810.1	Barley	cytosol	78.02	74.18
TraesCS1A01G413900.1	Wheat	cytosol, golgi	78.02	74.18
HORVU7Hr1G018660.1	Barley	cytosol	78.45	73.98
TraesCS7A01G083200.1	Wheat	cytosol	78.45	73.98
TraesCS1B01G443900.1	Wheat	cytosol	77.59	73.77
TraesCS7D01G078000.1	Wheat	cytosol, golgi	78.02	73.58
TraesCS1D01G421300.1	Wheat	cytosol	77.16	73.36
Os02t0770000-01	Rice	cytosol	77.59	73.17
EES14124	Sorghum	cytosol	77.16	73.06
EER89160	Sorghum	cytosol	77.16	73.06
Zm00001d036108_P001	Maize	cytosol	78.02	72.98
Zm00001d045403_P001	Maize	cytosol	77.59	72.87
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	77.16	72.76
TraesCS4A01G381500.1	Wheat	cytosol	77.59	67.92
VIT_01s0137g00420.t01	Wine grape	cytosol	28.02	23.81
VIT_01s0010g02900.t01	Wine grape	cytosol	26.72	22.79

Protein Annotations

EntrezGene:100262044	wikigene:100262044	MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	ProteinID:CBI24056	ProteinID:CBI24056.3
UniProt:D7T0M7	EMBL:FN595502	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
EntrezGene:LOC100262044	wikigene:LOC100262044	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF100	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.010	TIGR:TC57465	UniParc:UPI00015C832A	ArrayExpress:VIT_11s0065g00320
EnsemblPlantsGene:VIT_11s0065g00320	EnsemblPlants:VIT_11s0065g00320.t01	unigene:Vvi.6564	RefSeq:XP_002266488	RefSeq:XP_002266488.1	SEG:seg

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:D7T0M7]

Coordinates

chr11:-:13994950..14013878

Molecular Weight (calculated)

24998.6 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.168

Length

232 amino acids

Sequence
(BLAST)

001: MDHLNQPHSM GTTIIGVTYN GGVVLGADSR TSTGVYVANR ASDKITQLTD NVYLCRSGSA ADSQILSDYV RYYLHQHTIQ LGQPATVKVA ANLVRLISYN
101: NKNMLQTGLI VGGWDKHEGG KIYGVPLGGT ILEQPFAIGG SGSSYLYGFF DQEWKEGMTK DEAEKLVVKA VSLAIARDGA SGGVVRTVTI NSEGVTKNFY
201: PGDTLPLWHE ELEPQNSLLD ILSSSSPEPM VS

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.