Factsheet for Os06t0139900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 4
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0770000-01	Rice	cytosol	90.65	90.65
Zm00001d045403_P001	Maize	cytosol	90.24	89.88
EER89160	Sorghum	cytosol	89.43	89.8
EES14124	Sorghum	cytosol	89.02	89.39
Zm00001d036108_P001	Maize	cytosol	89.84	89.11
HORVU7Hr1G018660.1	Barley	cytosol	89.02	89.02
TraesCS1B01G443900.1	Wheat	cytosol	87.8	88.52
TraesCS7D01G078000.1	Wheat	cytosol, golgi	88.21	88.21
TraesCS1D01G421300.1	Wheat	cytosol	87.4	88.11
TraesCS1A01G413900.1	Wheat	cytosol, golgi	87.4	88.11
HORVU1Hr1G090810.1	Barley	cytosol	86.59	87.3
TraesCS7A01G083200.1	Wheat	cytosol	84.96	84.96
GSMUA_Achr7P15820_001	Banana	cytosol	75.2	82.59
GSMUA_Achr5P24110_001	Banana	cytosol	75.61	79.83
TraesCS4A01G381500.1	Wheat	cytosol	84.96	78.87
CDY36450	Canola	cytosol	73.58	77.68
Bra010243.1-P	Field mustard	cytosol	73.17	77.25
Bra011257.1-P	Field mustard	cytosol	73.17	77.25
Bra024015.1-P	Field mustard	cytosol	73.17	77.25
CDX68732	Canola	cytosol	73.17	77.25
CDY28254	Canola	cytosol	73.17	77.25
CDY23291	Canola	cytosol	73.17	77.25
CDY13421	Canola	cytosol	73.17	77.25
VIT_11s0065g00320.t01	Wine grape	cytosol	72.76	77.16
PGSC0003DMT400025311	Potato	cytosol	73.98	77.12
Solyc07g016200.2.1	Tomato	extracellular, plastid	73.98	77.12
CDX72300	Canola	cytosol	72.76	76.82
KRH52623	Soybean	cytosol, nucleus	72.36	76.39
VIT_04s0008g02850.t01	Wine grape	cytosol	69.11	76.23
KRH61963	Soybean	endoplasmic reticulum	71.95	75.97
PGSC0003DMT400035591	Potato	cytosol	71.95	75.0
AT4G31300.2	Thale cress	cytosol	71.14	74.79
PGSC0003DMT400051560	Potato	cytosol	25.2	48.44
Os06t0153800-01	Rice	plasma membrane, plastid	27.64	24.55
Os05t0187000-01	Rice	plastid	25.61	23.16

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	EntrezGene:4340065	EMBL:AK104152	ProteinID:BAD68674.1	ProteinID:BAF18662.1
ProteinID:BAS96072.1	ProteinID:EAZ35771.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	EnsemblPlantsGene:Os06g0139900	EnsemblPlants:Os06t0139900-01	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	UniProt:Q5VPF1	SUPFAM:SSF56235	MEROPS:T01.010	UniParc:UPI0000457F3E	RefSeq:XP_015644439.1
SEG:seg	:	:	:	:	:

Description

Similar to Beta 1 subunit of 20S proteasome. (Os06t0139900-01)

Coordinates

chr6:-:2091289..2094645

Molecular Weight (calculated)

26261.3 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.099

Length

246 amino acids

Sequence
(BLAST)

001: MDASLMGSPS PAAGDAPTSG EHRMGTTIVG VCYDGGVVLA ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSAADTQVI SEYVRYFLHQ HTIQLGQPAT
101: VKVAANLIRL LAYQNKNMLQ AGMIVGGWDK YEGGQIFSVP LGGTILRQPF AIGGSGSSYL YGLLDHEWKE GMSQEEAEKF VVKVVSLAIA RDGASGGVVR
201: TVTINADGVS RKFHPGDKLP LWHEEMEPQN SLLDILAAGN PDPMVQ

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.