CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61963	Soybean	endoplasmic reticulum	98.28	98.28
VIT_04s0008g02850.t01	Wine grape	cytosol	83.26	87.0
Bra010243.1-P	Field mustard	cytosol	86.27	86.27
CDY28254	Canola	cytosol	86.27	86.27
CDY23291	Canola	cytosol	86.27	86.27
CDY13421	Canola	cytosol	86.27	86.27
CDX68732	Canola	cytosol	86.27	86.27
Bra024015.1-P	Field mustard	cytosol	86.27	86.27
Bra011257.1-P	Field mustard	cytosol	86.27	86.27
CDX72300	Canola	cytosol	85.84	85.84
CDY36450	Canola	cytosol	85.84	85.84
GSMUA_Achr7P15820_001	Banana	cytosol	82.4	85.71
AT4G31300.2	Thale cress	cytosol	84.55	84.19
GSMUA_Achr5P24110_001	Banana	cytosol	83.69	83.69
PGSC0003DMT400025311	Potato	cytosol	81.55	80.51
Solyc07g016200.2.1	Tomato	extracellular, plastid	81.12	80.08
PGSC0003DMT400035591	Potato	cytosol	80.26	79.24
TraesCS1A01G413900.1	Wheat	cytosol, golgi	76.39	72.95
HORVU1Hr1G090810.1	Barley	cytosol	76.39	72.95
TraesCS7A01G083200.1	Wheat	cytosol	76.82	72.76
HORVU7Hr1G018660.1	Barley	cytosol	76.82	72.76
EES14124	Sorghum	cytosol	76.39	72.65
EER89160	Sorghum	cytosol	76.39	72.65
TraesCS1B01G443900.1	Wheat	cytosol	75.97	72.54
TraesCS7D01G078000.1	Wheat	cytosol, golgi	76.39	72.36
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	76.39	72.36
TraesCS1D01G421300.1	Wheat	cytosol	75.54	72.13
Os02t0770000-01	Rice	cytosol	75.97	71.95
Zm00001d036108_P001	Maize	cytosol	76.39	71.77
Zm00001d045403_P001	Maize	cytosol	75.97	71.66
TraesCS4A01G381500.1	Wheat	cytosol	76.82	67.55
KRH73888	Soybean	cytosol, nucleus	28.33	24.35
KRH14247	Soybean	cytosol	28.33	24.35
KRH63751	Soybean	cytosol	25.32	21.69
KRH54198	Soybean	nucleus	24.89	21.32

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	EMBL:ACUP02003425	EnsemblPlantsGene:GLYMA_06G078500	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603
UniProt:I1K964	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRH52623	ProteinID:KRH52623	ProteinID:KRH52623.1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
MEROPS:T01.010	UniParc:UPI0001E7A3ED	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:6073611..6077270

Molecular Weight (calculated)

25114.8 Da

IEP (calculated)

5.234

GRAVY (calculated)

-0.082

Length

233 amino acids

Sequence
(BLAST)

001: MDQKVDFSAP HSMGTTIIGV TYNGGVVLGA DSRTSTGVYV ANRASDKITQ LTDNVYVCRS GSAADSQIVS DYVRYFLHQH TIQLGQPATV KVAANLVRLL
101: AYNNKNFLQT GLIVGGWDKY EGGQIYGVPL GGTIVQQPFA IGGSGSSYLY GFFDQAWKEG MTKDEAEDLV KKAVSLAIAR DGASGGVVRT VIINSEGVTR
201: NFYPGDQLPL WHEEMEAHNS LLDILGVPEP MSM

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.