Factsheet for Solyc07g016200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 4
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025311	Potato	cytosol	95.76	95.76
VIT_11s0065g00320.t01	Wine grape	cytosol	82.63	84.05
GSMUA_Achr7P15820_001	Banana	cytosol	79.66	83.93
Bra010243.1-P	Field mustard	cytosol	82.63	83.69
CDX68732	Canola	cytosol	82.63	83.69
CDY23291	Canola	cytosol	82.63	83.69
CDY28254	Canola	cytosol	82.63	83.69
Bra011257.1-P	Field mustard	cytosol	82.2	83.26
Bra024015.1-P	Field mustard	cytosol	81.78	82.83
CDY13421	Canola	cytosol	81.78	82.83
CDX72300	Canola	cytosol	81.36	82.4
CDY36450	Canola	cytosol	81.36	82.4
KRH61963	Soybean	endoplasmic reticulum	80.08	81.12
KRH52623	Soybean	cytosol, nucleus	80.08	81.12
GSMUA_Achr5P24110_001	Banana	cytosol	79.66	80.69
AT4G31300.2	Thale cress	cytosol	79.66	80.34
Os06t0139900-01	Rice	cytosol, plasma membrane, plastid	77.12	73.98
EES14124	Sorghum	cytosol	76.69	73.88
EER89160	Sorghum	cytosol	76.69	73.88
Os02t0770000-01	Rice	cytosol	76.69	73.58
Zm00001d036108_P001	Maize	cytosol	77.12	73.39
Zm00001d045403_P001	Maize	cytosol	76.69	73.28
TraesCS1B01G443900.1	Wheat	cytosol	75.42	72.95
TraesCS1A01G413900.1	Wheat	cytosol, golgi	75.0	72.54
TraesCS1D01G421300.1	Wheat	cytosol	75.0	72.54
TraesCS7D01G078000.1	Wheat	cytosol, golgi	75.42	72.36
HORVU1Hr1G090810.1	Barley	cytosol	74.58	72.13
HORVU7Hr1G018660.1	Barley	cytosol	75.0	71.95
TraesCS7A01G083200.1	Wheat	cytosol	75.0	71.95
TraesCS4A01G381500.1	Wheat	cytosol	75.42	67.17
Solyc05g056160.2.1	Tomato	extracellular	28.81	24.91
Solyc05g013820.2.1	Tomato	nucleus	26.27	24.9
Solyc04g024420.2.1	Tomato	cytosol, extracellular	26.27	22.71
Solyc03g063420.1.1	Tomato	mitochondrion	18.22	22.51
Solyc03g063450.1.1	Tomato	cytosol	10.17	11.06

Protein Annotations

MapMan:19.2.6.1.2.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:K4CCD7	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF102	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:Solyc07g016200.2	EnsemblPlants:Solyc07g016200.2.1	MEROPS:T01.010	UniParc:UPI000276BDEA	SEG:seg

Description

Proteasome subunit beta type-6 [Source:Projected from Arabidopsis thaliana (AT4G31300) UniProtKB/Swiss-Prot;Acc:Q8LD27]

Coordinates

chr7:-:6442412..6451485

Molecular Weight (calculated)

25343.1 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.095

Length

236 amino acids

Sequence
(BLAST)

001: MDKSSLDVEQ PHSMGTTIIG VTYNGGVVLG ADSRTSTGMY VANRASDKIT QLTDNVYVCR SGSAADSQVV SDYVRYFLHQ HTIQLGQPAT VKVAASLIRQ
101: ISYNNKAMLQ TGMIVGGWDK YEGGKIYGVP LGGTLLEQPF AIGGSGSSYL YGFFDQAWRE GMSHEEAEKL VVTAVSLAIA RDGASGGVVR TITINKDGVK
201: RKFYPGDTLP LWHEEIESVN SLLDIVPAAS PDPMVS

Best Arabidopsis Sequence Match ( AT4G31300.3 )
(BLAST)

001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM

Arabidopsis Description

PBA1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.