Factsheet for Solyc04g024420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	61.9	96.02
Solyc05g013820.2.1	Tomato	nucleus	75.82	83.13
VIT_01s0137g00420.t01	Wine grape	cytosol	81.69	81.69
KRH73888	Soybean	cytosol, nucleus	78.02	78.6
KRH14247	Soybean	cytosol	78.02	78.6
AT5G40580.1	Thale cress	cytosol	78.02	77.74
EER98255	Sorghum	cytosol	77.29	77.29
GSMUA_Achr9P20290_001	Banana	cytosol	77.29	77.29
Zm00001d019262_P001	Maize	cytosol	76.92	76.92
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	76.56	76.84
TraesCS1A01G122700.1	Wheat	cytosol	76.56	76.84
Os05t0187000-01	Rice	plastid	76.56	76.84
KXG19118	Sorghum	cytosol	76.56	76.56
TraesCS1B01G141900.1	Wheat	cytosol	75.82	76.1
AT3G27430.2	Thale cress	cytosol	75.82	75.82
CDY34146	Canola	cytosol	75.09	75.09
Bra033011.1-P	Field mustard	cytosol	75.09	75.09
GSMUA_Achr7P03760_001	Banana	cytosol	75.09	74.82
HORVU1Hr1G028190.1	Barley	plastid	75.82	65.3
CDX83694	Canola	golgi	77.66	64.05
CDY03969	Canola	extracellular	76.56	63.72
OQU86162	Sorghum	plastid	28.57	49.37
Zm00001d035915_P001	Maize	extracellular	76.19	48.48
CDY13711	Canola	cytosol	80.59	41.9
Bra025276.1-P	Field mustard	cytosol	79.49	39.38
Solyc07g016200.2.1	Tomato	extracellular, plastid	22.71	26.27
Solyc05g056160.2.1	Tomato	extracellular	20.88	20.88
Solyc03g063420.1.1	Tomato	mitochondrion	13.19	18.85
Solyc03g063450.1.1	Tomato	cytosol	8.06	10.14

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:K4BQP1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:Solyc04g024420.2	EnsemblPlants:Solyc04g024420.2.1	MEROPS:T01.A02	UniParc:UPI0002765605	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:K4BQP1]

Coordinates

chr4:+:31572116..31577886

Molecular Weight (calculated)

29476.5 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.087

Length

273 amino acids

Sequence
(BLAST)

001: MASNATIDVP SKGGFSFDLC RRNEMLLKKG LRSPSFLKTG TTIVGLIFQD GVILGADTRA TEGPIVADKN CEKIHYMAHN IYCCGAGTAA DTEAVTDMVS
101: SQLKLHRYHT GHESRVVTAL TLLKSHLFSY QGHVSAALVL GGVDVSGPHL HTIYPHGSTD TLPYATMGSG SLAAMAIFES KYREGLSKNE GIKLVAEAIL
201: SGVFNDLGSG SNVDICVITK GHTEYLRNHM SPYPRTDPQK GYSFPKKTEV ILTKIIPLRE MVEVIEGGDA MEE

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.