Factsheet for Bra025276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13711	Canola	cytosol	94.74	99.43
AT3G27430.2	Thale cress	cytosol	44.83	90.48
Bra033011.1-P	Field mustard	cytosol	44.1	89.01
CDX83694	Canola	golgi	49.55	82.48
VIT_01s0137g00420.t01	Wine grape	cytosol	40.47	81.69
KRH14247	Soybean	cytosol	39.93	81.18
KRH73888	Soybean	cytosol, nucleus	39.93	81.18
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	25.59	80.11
Os05t0187000-01	Rice	plastid	39.38	79.78
Zm00001d019262_P001	Maize	cytosol	39.38	79.49
EER98255	Sorghum	cytosol	39.38	79.49
Solyc04g024420.2.1	Tomato	cytosol, extracellular	39.38	79.49
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	38.66	78.31
TraesCS1A01G122700.1	Wheat	cytosol	38.66	78.31
KXG19118	Sorghum	cytosol	38.66	78.02
TraesCS1B01G141900.1	Wheat	cytosol	38.29	77.57
GSMUA_Achr7P03760_001	Banana	cytosol	38.29	77.01
GSMUA_Achr9P20290_001	Banana	cytosol	38.11	76.92
Solyc05g013820.2.1	Tomato	nucleus	34.48	76.31
HORVU1Hr1G028190.1	Barley	plastid	39.02	67.82
PGSC0003DMT400043694	Potato	cytosol	37.57	62.73
OQU86162	Sorghum	plastid	16.33	56.96
Zm00001d035915_P001	Maize	extracellular	41.38	53.15
Bra011257.1-P	Field mustard	cytosol	11.62	27.47
Bra024015.1-P	Field mustard	cytosol	11.43	27.04
Bra010243.1-P	Field mustard	cytosol	11.43	27.04
Bra022650.1-P	Field mustard	cytosol	4.9	24.77
Bra019807.1-P	Field mustard	cytosol	11.8	23.72
Bra026938.1-P	Field mustard	cytosol	8.35	20.09

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra025276	EnsemblPlants:Bra025276.1	EnsemblPlants:Bra025276.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4E920
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI000253F5A2	SEG:seg	:	:	:	:

Description

AT5G40580 (E=4e-151) PBB2 | PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA06:-:22448057..22451685

Molecular Weight (calculated)

57101.9 Da

IEP (calculated)

4.322

GRAVY (calculated)

-0.140

Length

551 amino acids

Sequence
(BLAST)

001: MKKNHATAAR TDPETDISID EALPVGAEAS GPSLAGPSSA DDEGDMSGVG DGGDEAEGES DELVGPSALS PELESGLDAG VLVDDDVGGF ALAPPPEDGE
101: ALGVVVEFFL ALVGAEALGG EVGAEAVDFC GDAAVDFGDA AAAGDFGGDA GGGFGDAAAA GDFGGDAWVD FGDAAAAGDF GGDAGVDFGD AAAAGEGDVE
201: LLSPLALGAP AGFGGSAAKT AVMAKAATAR DRSLRVIIEG EKDIKAKKKS YFGEMKEELF RDSSRVRIHS RPGQFRRMSQ STVDVPPKGG FSFDLCKRND
301: MLIQKGLKAP SFLKTGTTIV GLIFKDGVIL GADTRATEGP IVADKNCEKI HYMAPNIYCC GAGTAGDTEE ATDMVSSQLR LHRYQTGRDS RVITALTLLK
401: KHLFSYQGHV SAALVLGGVD ITGPHLHTIY PHGSTDTLPF ATMGSGSLAA MSVFEAKYKE GLTRDEGIKL VAEAICSGIF NDLGSGSNVD ICVITKGNKE
501: YLRNYMEPNP RTYVSSKGYS FTKKTEVLRT KITPLMERVE ITEVTGEAME E

Best Arabidopsis Sequence Match ( AT3G27430.2 )
(BLAST)

001: MSQSTVDVPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVITALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAESICS
201: GIFNDLGSGS NVDICVITKG NKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEITEVGEA MEE

Arabidopsis Description

PBB1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178VCF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.