Factsheet for TraesCS1A01G122700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G123600.1	Wheat	cytosol, golgi, unclear	99.63	99.63
TraesCS1B01G141900.1	Wheat	cytosol	98.9	98.9
Zm00001d019262_P001	Maize	cytosol	90.07	89.74
EER98255	Sorghum	cytosol	90.07	89.74
KXG19118	Sorghum	cytosol	89.34	89.01
Os05t0187000-01	Rice	plastid	88.97	88.97
HORVU1Hr1G028190.1	Barley	plastid	98.16	84.23
GSMUA_Achr9P20290_001	Banana	cytosol	82.72	82.42
GSMUA_Achr7P03760_001	Banana	cytosol	81.62	81.02
VIT_01s0137g00420.t01	Wine grape	cytosol	81.25	80.95
KRH14247	Soybean	cytosol	80.51	80.81
KRH73888	Soybean	cytosol, nucleus	80.51	80.81
PGSC0003DMT400034355	Potato	cytosol, mitochondrion	50.37	77.84
AT5G40580.1	Thale cress	cytosol	77.21	76.64
Solyc04g024420.2.1	Tomato	cytosol, extracellular	76.84	76.56
AT3G27430.2	Thale cress	cytosol	75.37	75.09
CDY34146	Canola	cytosol	74.63	74.36
Bra033011.1-P	Field mustard	cytosol	74.63	74.36
Solyc05g013820.2.1	Tomato	nucleus	67.65	73.9
CDX83694	Canola	golgi	77.21	63.44
CDY03969	Canola	extracellular	75.37	62.5
PGSC0003DMT400043694	Potato	cytosol	72.79	60.0
Zm00001d035915_P001	Maize	extracellular	89.71	56.88
CDY13711	Canola	cytosol	79.41	41.14
Bra025276.1-P	Field mustard	cytosol	78.31	38.66
TraesCS7A01G083200.1	Wheat	cytosol	25.37	28.05
TraesCS4A01G381500.1	Wheat	cytosol	26.1	26.79
TraesCS1A01G413900.1	Wheat	cytosol, golgi	23.16	25.82
TraesCS7A01G110200.1	Wheat	cytosol	20.59	20.07

Protein Annotations

MapMan:19.2.6.1.2.2	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF67	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS1A01G122700	EnsemblPlants:TraesCS1A01G122700.1	TIGR:cd03763	:	:

Description

No Description!

Coordinates

chr1A:+:139558176..139561191

Molecular Weight (calculated)

29091.8 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.113

Length

272 amino acids

Sequence
(BLAST)

001: MAGSTELPTK GGFSFDLCRR NAMLEKNGLK MPGFRKTGTT IVGLVFADGV VLGADTRATE GPIVADKNCE KIHFMAPNIY CCGAGTAADT EAVTDMVSSQ
101: LQLHRYATSR ESRVVTALTL LKTHLFNYQG HVSAALVLGG VDVTGPHLHT VYPHGSTDTL PFATMGSGSL AAMSVFESKY REGLTREEGI ALVAEAIRAG
201: IFNDLGSGSN VDVCVITKGN TEYLRNHELP NPRTFVSSKG YSFNKGHTEV LSTKITQLKL KPEVADGDAM EE

Best Arabidopsis Sequence Match ( AT5G40580.2 )
(BLAST)

001: MSQSSVDIPP KGGFSFDLCK RNDMLTQKGL KAPSFLKTGT TIVGLIFKDG VILGADTRAT EGPIVADKNC EKIHYMAPNI YCCGAGTAAD TEAVTDMVSS
101: QLRLHRYQTG RDSRVVTALT LLKKHLFSYQ GHVSAALVLG GVDITGPHLH TIYPHGSTDT LPFATMGSGS LAAMSVFEAK YKEGLTRDEG IKLVAEAICS
201: GIFNDLGSGS NVDICVITKG HKEYLRNYME PNPRTYVSSK GYSFTKKTEV LLTKITPLLE RVEIVEVAGE AMEE

Arabidopsis Description

PBB2Proteasome subunit beta type-7-B [Source:UniProtKB/Swiss-Prot;Acc:Q7DLS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.