Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G110330.1 | Barley | cytosol | 98.92 | 98.92 |
| TraesCS7B01G008100.1 | Wheat | golgi, unclear | 92.47 | 92.47 |
| TraesCS7D01G105500.1 | Wheat | cytosol | 88.53 | 88.53 |
| Os06t0153800-01 | Rice | plasma membrane, plastid | 77.78 | 78.34 |
| EER89220 | Sorghum | cytosol | 75.63 | 75.36 |
| Zm00001d045315_P003 | Maize | cytosol | 76.34 | 73.7 |
| KRH54198 | Soybean | nucleus | 70.97 | 72.79 |
| HORVU7Hr1G022970.1 | Barley | plastid | 86.38 | 71.3 |
| KRH63751 | Soybean | cytosol | 68.82 | 70.59 |
| VIT_01s0010g02900.t01 | Wine grape | cytosol | 68.82 | 70.59 |
| AT3G26340.1 | Thale cress | cytosol | 66.67 | 68.13 |
| Solyc03g063420.1.1 | Tomato | mitochondrion | 43.37 | 63.35 |
| AT1G13060.3 | Thale cress | cytosol | 65.95 | 61.74 |
| PGSC0003DMT400038738 | Potato | cytosol | 24.73 | 57.02 |
| Bra022650.1-P | Field mustard | cytosol | 22.22 | 56.88 |
| CDY70092 | Canola | cytosol | 12.54 | 42.17 |
| GSMUA_Achr1P13460_001 | Banana | cytosol | 16.13 | 31.69 |
| TraesCS1A01G413900.1 | Wheat | cytosol, golgi | 22.58 | 25.82 |
| TraesCS7A01G083200.1 | Wheat | cytosol | 21.86 | 24.8 |
| TraesCS4A01G381500.1 | Wheat | cytosol | 22.94 | 24.15 |
| TraesCS1A01G122700.1 | Wheat | cytosol | 20.07 | 20.59 |
Protein Annotations
| MapMan:19.2.6.1.2.5 | Gene3D:3.60.20.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PRINTS:PR00141 | ScanProsite:PS00854 | PFscan:PS51476 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF63 | InterPro:Pept_T1A_subB | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b |
| SUPFAM:SSF56235 | EnsemblPlantsGene:TraesCS7A01G110200 | EnsemblPlants:TraesCS7A01G110200.1 | TIGR:cd03761 | SEG:seg | : |
Description
No Description!
Coordinates
chr7A:-:67578217..67580671
Molecular Weight (calculated)
29849.3 Da
IEP (calculated)
5.954
GRAVY (calculated)
-0.138
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPNLSALEN HFGAAAAGSD DLGGLFSADA AGQLALEFPT CNDFDGFQKA TKEMVNNKKG TTTLSFIFDK GVIVAADSRA SMGGYISSQT VRKIIEINPY
101: MLGTMAGGAA DCQFWHRNLG VKCRLHELAN KRRISIAGSS KTLANILYSY RGMGLSIGTM IAGFDETGPG LYYVDSEGAR LKGSRFSVGS GSLYAYGILD
201: EGYKFNMSVE EAAELARRAI YHATFRDGAS GGCVSVYYVG PDGWKKLSGD DVGELHYHYY PVQAAPVEQE MAEAPSAST
101: MLGTMAGGAA DCQFWHRNLG VKCRLHELAN KRRISIAGSS KTLANILYSY RGMGLSIGTM IAGFDETGPG LYYVDSEGAR LKGSRFSVGS GSLYAYGILD
201: EGYKFNMSVE EAAELARRAI YHATFRDGAS GGCVSVYYVG PDGWKKLSGD DVGELHYHYY PVQAAPVEQE MAEAPSAST
001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE
Arabidopsis Description
PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.