Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16054 | Canola | extracellular | 85.91 | 93.43 |
| CDY21081 | Canola | extracellular | 85.57 | 93.07 |
| CDY26610 | Canola | cytosol | 85.57 | 93.07 |
| CDY34594 | Canola | cytosol | 85.57 | 93.07 |
| CDX98014 | Canola | extracellular | 85.23 | 92.7 |
| CDY19402 | Canola | cytosol | 85.23 | 92.7 |
| Bra019807.1-P | Field mustard | cytosol | 84.9 | 92.34 |
| Bra026938.1-P | Field mustard | cytosol | 69.8 | 90.83 |
| AT3G26340.1 | Thale cress | cytosol | 81.88 | 89.38 |
| HORVU1Hr1G053910.1 | Barley | cytosol | 10.07 | 83.33 |
| VIT_01s0010g02900.t01 | Wine grape | cytosol | 74.83 | 81.99 |
| Solyc05g056160.2.1 | Tomato | extracellular | 74.16 | 80.95 |
| PGSC0003DMT400059981 | Potato | cytosol | 73.83 | 80.88 |
| KRH54198 | Soybean | nucleus | 72.48 | 79.41 |
| KRH63751 | Soybean | cytosol | 72.15 | 79.04 |
| Os06t0153800-01 | Rice | plasma membrane, plastid | 64.77 | 69.68 |
| Zm00001d045315_P003 | Maize | cytosol | 65.44 | 67.47 |
| TraesCS7B01G008100.1 | Wheat | golgi, unclear | 63.09 | 67.38 |
| EER89220 | Sorghum | cytosol | 63.09 | 67.14 |
| TraesCS7D01G105500.1 | Wheat | cytosol | 62.08 | 66.31 |
| HORVU5Hr1G110330.1 | Barley | cytosol | 61.74 | 65.95 |
| TraesCS7A01G110200.1 | Wheat | cytosol | 61.74 | 65.95 |
| HORVU7Hr1G022970.1 | Barley | plastid | 62.42 | 55.03 |
| GSMUA_Achr6P28520_001 | Banana | extracellular | 16.11 | 51.06 |
| AT4G31300.2 | Thale cress | cytosol | 21.48 | 27.35 |
| AT3G27430.2 | Thale cress | cytosol | 21.48 | 23.44 |
| AT5G40580.1 | Thale cress | cytosol | 21.14 | 22.99 |
Protein Annotations
| MapMan:19.2.6.1.2.5 | Gene3D:3.60.20.10 | EntrezGene:837863 | ProteinID:AEE28966.1 | ProteinID:ANM60904.1 | ArrayExpress:AT1G13060 |
| EnsemblPlantsGene:AT1G13060 | RefSeq:AT1G13060 | TAIR:AT1G13060 | RefSeq:AT1G13060-TAIR-G | EnsemblPlants:AT1G13060.3 | Unigene:At.22436 |
| UniProt:F4HP14 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046686 | GO:GO:0051603 | InterPro:IPR023333 |
| InterPro:IPR029055 | RefSeq:NP_001184978.1 | RefSeq:NP_001323153.1 | InterPro:Ntn_hydrolases_N | Symbol:PBE1 | PFAM:PF00227 |
| PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF63 | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 |
| UniParc:UPI0001E92ADE | : | : | : | : | : |
Description
PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
Coordinates
chr1:+:4452212..4454876
Molecular Weight (calculated)
32346.3 Da
IEP (calculated)
6.725
GRAVY (calculated)
-0.297
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISVSSLKN SSKNMHPFDI
101: VDFGRNTTSQ SVKKIIEINP YMLGTMAGGA ADCQFWHRNL GIKCRLHELA NKRRISVSGA SKLLANMLYS YRGMGLSVGT MIAGWDETGP GLYYVDNEGG
201: RLKGDRFSVG SGSPYAYGVL DSGYKYDMSV EEASELARRS IYHATFRDGA SGGVASVYHV GPEGWTKLSG DDVGELHYHY YPVAPATAEQ VMEEATAE
101: VDFGRNTTSQ SVKKIIEINP YMLGTMAGGA ADCQFWHRNL GIKCRLHELA NKRRISVSGA SKLLANMLYS YRGMGLSVGT MIAGWDETGP GLYYVDNEGG
201: RLKGDRFSVG SGSPYAYGVL DSGYKYDMSV EEASELARRS IYHATFRDGA SGGVASVYHV GPEGWTKLSG DDVGELHYHY YPVAPATAEQ VMEEATAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.