Factsheet for HORVU5Hr1G110330.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G013820.4
HORVU5Hr1G059690.7
HORVU6Hr1G076380.4
HORVU7Hr1G039360.7
HORVU7Hr1G039390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26340.1	HORVU2Hr1G013820.4	AT1G10530.1	21798944
AT3G26340.1	HORVU5Hr1G059690.7	AT1G10530.1	21798944
AT3G26340.1	HORVU6Hr1G076380.4	AT1G10530.1	21798944
AT3G26340.1	HORVU7Hr1G039360.7	AT1G10530.1	21798944
AT3G26340.1	HORVU7Hr1G039390.1	AT1G10530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G110200.1	Wheat	cytosol	98.92	98.92
TraesCS7B01G008100.1	Wheat	golgi, unclear	92.83	92.83
HORVU1Hr1G053910.1	Barley	cytosol	11.83	91.67
TraesCS7D01G105500.1	Wheat	cytosol	89.25	89.25
Os06t0153800-01	Rice	plasma membrane, plastid	78.14	78.7
EER89220	Sorghum	cytosol	75.63	75.36
Zm00001d045315_P003	Maize	cytosol	76.34	73.7
KRH54198	Soybean	nucleus	70.97	72.79
HORVU7Hr1G022970.1	Barley	plastid	86.02	71.01
KRH63751	Soybean	cytosol	68.82	70.59
VIT_01s0010g02900.t01	Wine grape	cytosol	68.46	70.22
AT3G26340.1	Thale cress	cytosol	66.67	68.13
Solyc03g063420.1.1	Tomato	mitochondrion	43.37	63.35
AT1G13060.3	Thale cress	cytosol	65.95	61.74
Bra022650.1-P	Field mustard	cytosol	22.22	56.88
HORVU1Hr1G090810.1	Barley	cytosol	22.58	25.82
HORVU7Hr1G018660.1	Barley	cytosol	22.58	25.61
HORVU1Hr1G028190.1	Barley	plastid	19.71	17.35

Protein Annotations

MapMan:19.2.6.1.2.5	Gene3D:3.60.20.10	UniProt:A0A287SQ05	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:HORVU5Hr1G110330
EnsemblPlants:HORVU5Hr1G110330.1	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PRINTS:PR00141
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF63	InterPro:Pept_T1A_subB	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000B488E9A	SEG:seg	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A287SQ05]

Coordinates

chrchr5H:+:632383586..632386920

Molecular Weight (calculated)

29971.3 Da

IEP (calculated)

5.634

GRAVY (calculated)

-0.162

Length

279 amino acids

Sequence
(BLAST)

001: MIPNLSALEN HFGAAAAGSD DFGGLFSADT ADQLALEFPT CNDFDGFQKA TKEMVNNKKG TTTLSFIFDK GVIVAADSRA SMGGYISSQT VRKIIEINPY
101: MLGTMAGGAA DCQFWHRNLG VKCRLHELAN KRRISIAGSS KTLANILYSY RGMGLSIGTM IAGFDETGPG LYYVDSEGAR LKGSRFSVGS GSLYAYGILD
201: EGYKFNMSVE EAAELARRAI YHATFRDGAS GGCVSVYYVG PDGWKKLSGD DVGELHYHYY PVQAAPVEQE MAEAPSAST

Best Arabidopsis Sequence Match ( AT1G13060.1 )
(BLAST)

001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE

Arabidopsis Description

PBE120S proteasome beta subunit E1 [Source:UniProtKB/TrEMBL;Acc:F4HP14]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.