Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G60010.1 | HORVU2Hr1G081800.3 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU5Hr1G071910.1 | AT4G26455.1 | 21798944 |
| AT1G60010.1 | HORVU7Hr1G048940.3 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G082600.1 | Wheat | cytosol | 82.67 | 82.67 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 80.2 | 80.2 |
| TraesCS2A01G084600.1 | Wheat | cytosol | 75.74 | 77.27 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 34.65 | 51.09 |
| OQU80443 | Sorghum | cytosol | 46.53 | 50.81 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 41.58 | 46.15 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 38.12 | 46.11 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 43.07 | 46.03 |
| Zm00001d032324_P001 | Maize | cytosol | 42.08 | 45.7 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 39.11 | 44.89 |
| HORVU5Hr1G059690.7 | Barley | nucleus | 43.07 | 42.86 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 38.61 | 42.16 |
| HORVU6Hr1G076380.4 | Barley | cytosol | 35.64 | 41.86 |
| KRH74672 | Soybean | cytosol | 35.15 | 41.28 |
| KRG99257 | Soybean | cytosol | 34.65 | 40.23 |
| KRH69484 | Soybean | cytosol | 34.16 | 40.12 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 32.67 | 40.0 |
| KRH45741 | Soybean | cytosol | 34.65 | 39.77 |
| Solyc05g006030.2.1 | Tomato | cytosol | 32.67 | 39.76 |
| HORVU7Hr1G039390.1 | Barley | cytosol | 32.67 | 39.76 |
| HORVU7Hr1G039360.7 | Barley | cytosol | 34.16 | 39.66 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 34.16 | 39.43 |
| AT5G50090.1 | Thale cress | cytosol | 30.69 | 38.99 |
| KRH63480 | Soybean | cytosol | 32.67 | 38.15 |
| AT5G62900.1 | Thale cress | cytosol | 30.2 | 37.89 |
| Bra000609.1-P | Field mustard | cytosol | 29.21 | 37.58 |
| KRH03351 | Soybean | cytosol | 33.66 | 37.36 |
| KRH57030 | Soybean | cytosol | 33.17 | 37.22 |
| KRH54436 | Soybean | cytosol | 33.17 | 37.02 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 33.66 | 36.96 |
| CDY21433 | Canola | cytosol | 28.71 | 36.94 |
| AT1G60010.1 | Thale cress | cytosol | 31.19 | 36.42 |
| CDY00334 | Canola | nucleus | 28.22 | 35.62 |
| CDX84364 | Canola | cytosol | 28.22 | 35.62 |
| Bra010130.1-P | Field mustard | nucleus | 28.22 | 35.62 |
| Bra035410.1-P | Field mustard | cytosol | 30.69 | 35.43 |
| CDY24507 | Canola | cytosol | 30.69 | 35.43 |
| PGSC0003DMT400083024 | Potato | cytosol | 28.22 | 35.4 |
| CDY69854 | Canola | cytosol | 30.69 | 35.23 |
| Bra027820.1-P | Field mustard | cytosol | 30.69 | 35.03 |
| Solyc06g071320.2.1 | Tomato | cytosol | 26.73 | 34.84 |
| CDY70563 | Canola | cytosol | 30.69 | 34.64 |
| CDY30923 | Canola | cytosol | 30.2 | 34.46 |
| CDY07805 | Canola | nucleus | 27.72 | 33.73 |
| Solyc03g114020.2.1 | Tomato | cytosol | 31.19 | 33.69 |
| Bra031717.1-P | Field mustard | cytosol | 27.23 | 33.13 |
| CDY34887 | Canola | cytosol | 27.23 | 33.13 |
| Bra035874.1-P | Field mustard | cytosol | 27.23 | 32.93 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 26.73 | 32.53 |
| PGSC0003DMT400063216 | Potato | cytosol | 29.7 | 32.09 |
| CDX87268 | Canola | cytosol | 25.25 | 31.88 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G013820.4 | EnsemblPlantsGene:HORVU2Hr1G013820 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF13 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:29875182..29996921
Molecular Weight (calculated)
21954.0 Da
IEP (calculated)
11.228
GRAVY (calculated)
-0.868
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHPGDG KVERLHWPTI AXDVMRRNPG HYVALVVLHH GSGGGVDVNP AVAGGGARIT KVKLLKPRDT LHLGQVYRLI TSQEVSKAVQ
101: TRRQERTRGC EGAIEQERPR LHRRRQPPRP RGDTAATTAA SGEQRQPADH QERKRLEKDR HHRSIAAGRG GGRGRHWRPA LQSITESSSS LGGHADCEDT
201: SK
101: TRRQERTRGC EGAIEQERPR LHRRRQPPRP RGDTAATTAA SGEQRQPADH QERKRLEKDR HHRSIAAGRG GGRGRHWRPA LQSITESSSS LGGHADCEDT
201: SK
001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS
Arabidopsis Description
D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.