CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH56393
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	KRH56393	AT4G26455.1	21798944
AT1G60010.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69484	Soybean	cytosol	92.44	92.44
KRG99257	Soybean	cytosol	60.47	59.77
KRH45741	Soybean	cytosol	61.05	59.66
PGSC0003DMT400040233	Potato	mitochondrion	56.98	59.39
VIT_01s0026g00730.t01	Wine grape	cytosol	58.14	57.14
Solyc05g006030.2.1	Tomato	cytosol	54.65	56.63
AT1G60010.1	Thale cress	cytosol	55.81	55.49
CDY24507	Canola	cytosol	52.33	51.43
Bra035410.1-P	Field mustard	cytosol	52.33	51.43
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	49.42	51.2
CDY69854	Canola	cytosol	52.33	51.14
Bra027820.1-P	Field mustard	cytosol	51.74	50.28
CDY70563	Canola	cytosol	51.74	49.72
CDY30923	Canola	cytosol	51.16	49.72
CDY34887	Canola	cytosol	46.51	48.19
Bra031717.1-P	Field mustard	cytosol	46.51	48.19
CDY07805	Canola	nucleus	45.93	47.59
GSMUA_Achr9P28200_001	Banana	cytosol	45.93	47.31
TraesCS7D01G194000.1	Wheat	cytosol	43.6	46.3
KRH03351	Soybean	cytosol	48.84	46.15
KRH57030	Soybean	cytosol	48.26	46.11
GSMUA_Achr5P23980_001	Banana	cytosol	36.63	45.99
KXG30786	Sorghum	cytosol	43.6	44.64
Zm00001d017998_P001	Maize	cytosol	44.19	43.93
KRH63480	Soybean	cytosol	43.6	43.35
TraesCS7B01G098100.1	Wheat	cytosol	41.28	42.77
TraesCS6A01G309500.1	Wheat	cytosol	44.19	42.22
KRH54436	Soybean	cytosol	44.19	41.99
TraesCS7A01G192700.1	Wheat	cytosol	40.7	41.92
Os08t0420700-01	Rice	cytosol, nucleus, plastid	45.93	41.8
GSMUA_Achr3P06040_001	Banana	cytosol	42.44	41.48
TraesCS6B01G339300.1	Wheat	cytosol	43.02	41.11
TraesCS6D01G288900.1	Wheat	cytosol	43.02	41.11
GSMUA_Achr9P18270_001	Banana	cytosol	43.02	40.66
EER96686	Sorghum	cytosol	41.86	40.22
Os02t0741700-01	Rice	cytosol	38.37	39.76
KXG19676	Sorghum	cytosol	40.12	39.66
Zm00001d037251_P001	Maize	cytosol	41.28	39.23
Os06t0236300-01	Rice	cytosol	43.02	39.15
Zm00001d020348_P001	Maize	cytosol	41.86	39.13
OQU80443	Sorghum	cytosol	41.86	38.92
TraesCS5A01G200100.1	Wheat	cytosol	44.19	38.58
HORVU6Hr1G076380.4	Barley	cytosol	38.37	38.37
Zm00001d052277_P001	Maize	cytosol	37.21	38.1
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	40.7	37.84
HORVU5Hr1G059690.7	Barley	nucleus	44.19	37.44
Os09t0381600-01	Rice	cytosol	44.77	37.02
TraesCS2A01G084700.1	Wheat	cytosol	43.02	37.0
TraesCS5B01G198500.1	Wheat	cytosol	43.02	37.0
Zm00001d032324_P001	Maize	cytosol	39.53	36.56
TraesCS5B01G198400.1	Wheat	cytosol	42.44	36.5
TraesCS5D01G205700.1	Wheat	cytosol	42.44	36.5
Zm00001d044783_P001	Maize	cytosol	36.63	36.21
HORVU7Hr1G039360.7	Barley	cytosol	36.63	36.21
TraesCS2B01G099400.1	Wheat	cytosol	42.44	36.14
TraesCS2D01G082600.1	Wheat	cytosol	42.44	36.14
TraesCS2D01G082500.1	Wheat	cytosol	40.7	35.9
TraesCS2A01G084600.1	Wheat	cytosol	41.28	35.86
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	41.28	35.68
HORVU2Hr1G013820.4	Barley	cytosol	41.28	35.15
TraesCS2A01G084400.1	Wheat	cytosol	40.7	35.0
TraesCS2B01G099100.1	Wheat	nucleus	40.7	35.0
TraesCS2D01G082300.1	Wheat	cytosol	40.7	35.0
HORVU7Hr1G039390.1	Barley	cytosol	33.72	34.94
TraesCS2B01G099200.1	Wheat	nucleus	40.12	34.5
KRH58136	Soybean	nucleus	35.47	33.89
TraesCS2A01G084500.1	Wheat	cytosol	40.12	33.66
KRH04405	Soybean	cytosol	34.3	33.15
TraesCS2B01G098900.1	Wheat	nucleus, plastid	29.07	27.62

Protein Annotations

EMBL:ACUP02000059	EnsemblPlants:KRH74672	EnsemblPlantsGene:GLYMA_01G035300	EntrezGene:100777177	InterPro:DUF4228_plant	PANTHER:PTHR33413
PANTHER:PTHR33413:SF4	PFAM:PF14009	ProteinID:KRH74672	ProteinID:KRH74672.1	UniParc:UPI0002337507	UniProt:I1J5D8
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3678713..3680543

Molecular Weight (calculated)

19139.0 Da

IEP (calculated)

10.774

GRAVY (calculated)

-0.684

Length

172 amino acids

Sequence
(BLAST)

001: MGNCQAVDGA VLVIQHPCGK IERLYWPVTA SEVMRTNPGH YVSLIIPLPV PPQEQNQEKK TVRFTRVKLL RPNETLNLGH AYRLITTQEV MKVLKAKKHA
101: KTRKPQAAET EKPHTVLPEK QSSASEAHTG GDSTHQGMRA ERHRPRTASA NPAVVRSKSW RPSLQSISES AS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.