CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	EER96942	AT4G26455.1	21798944
AT1G60010.1	EES14314	AT4G26455.1	21798944
AT1G60010.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052277_P001	Maize	cytosol	71.43	71.43
TraesCS6D01G288900.1	Wheat	cytosol	73.21	68.33
TraesCS6B01G339300.1	Wheat	cytosol	73.21	68.33
TraesCS6A01G309500.1	Wheat	cytosol	68.45	63.89
Os02t0741700-01	Rice	cytosol	60.71	61.45
HORVU6Hr1G076380.4	Barley	cytosol	62.5	61.05
GSMUA_Achr5P23980_001	Banana	cytosol	48.21	59.12
KXG19676	Sorghum	cytosol	55.36	53.45
GSMUA_Achr9P28200_001	Banana	cytosol	51.79	52.1
GSMUA_Achr3P06040_001	Banana	cytosol	52.98	50.57
GSMUA_Achr9P18270_001	Banana	cytosol	52.38	48.35
EER96686	Sorghum	cytosol	51.19	48.04
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	51.19	46.49
OQU80443	Sorghum	cytosol	50.6	45.95
KRH45741	Soybean	cytosol	47.02	44.89
KRG99257	Soybean	cytosol	46.43	44.83
KRH74672	Soybean	cytosol	44.64	43.6
KRH69484	Soybean	cytosol	44.05	43.02
AT1G60010.1	Thale cress	cytosol	44.05	42.77
PGSC0003DMT400040233	Potato	mitochondrion	41.67	42.42
CDY24507	Canola	cytosol	44.05	42.29
Bra035410.1-P	Field mustard	cytosol	44.05	42.29
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	41.67	42.17
VIT_01s0026g00730.t01	Wine grape	cytosol	43.45	41.71
Bra000609.1-P	Field mustard	cytosol	38.1	40.76
CDX84364	Canola	cytosol	38.69	40.62
Bra010130.1-P	Field mustard	nucleus	38.69	40.62
CDY00334	Canola	nucleus	38.69	40.62
AT5G50090.1	Thale cress	cytosol	38.1	40.25
CDY30923	Canola	cytosol	42.26	40.11
Bra027820.1-P	Field mustard	cytosol	42.26	40.11
Solyc06g071320.2.1	Tomato	cytosol	36.9	40.0
CDY69854	Canola	cytosol	41.67	39.77
Bra031717.1-P	Field mustard	cytosol	39.29	39.76
Solyc05g006030.2.1	Tomato	cytosol	39.29	39.76
CDY34887	Canola	cytosol	39.29	39.76
AT5G62900.1	Thale cress	cytosol	38.1	39.75
CDY70563	Canola	cytosol	42.26	39.66
CDY07805	Canola	nucleus	38.69	39.16
CDY21433	Canola	cytosol	36.31	38.85
KRH63480	Soybean	cytosol	39.88	38.73
VIT_17s0000g07840.t01	Wine grape	cytosol	42.26	38.59
PGSC0003DMT400083024	Potato	cytosol	36.9	38.51
PGSC0003DMT400063216	Potato	cytosol	42.86	38.5
Solyc03g114020.2.1	Tomato	cytosol	42.86	38.5
KRH57030	Soybean	cytosol	41.07	38.33
KRH03351	Soybean	cytosol	41.07	37.91
KRH54436	Soybean	cytosol	38.69	35.91
Bra035874.1-P	Field mustard	cytosol	34.52	34.73
CDX87268	Canola	cytosol	30.95	32.5
KXG39943	Sorghum	cytosol	36.9	27.8

Protein Annotations

EnsemblPlants:KXG30786	EnsemblPlantsGene:SORBI_3004G242300	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF6	PFAM:PF14009
ProteinID:KXG30786	ProteinID:KXG30786.1	SEG:seg	UniParc:UPI0007F1A5A7	UniProt:A0A194YRH1	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:+:59033095..59034934

Molecular Weight (calculated)

18762.1 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.833

Length

168 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA NVLLQHPGGR VERLYWSTSA AEVMRANPGH YVALVTLRVA EERQDAPGGE RRTVRLTRVK LLKPKETLLL GHVYRLITTQ EVTKAVQARK
101: EEKQRKAQQQ LLESRQGTPR GAPEEDDDEA ALDASLDQLA RQDNGSRSSS ARHRQWRPSL QSIDEATS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.