Factsheet for Bra027820.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70563	Canola	cytosol	96.61	95.53
AT1G60010.1	Thale cress	cytosol	72.88	74.57
Bra035410.1-P	Field mustard	cytosol	70.62	71.43
Bra031717.1-P	Field mustard	cytosol	54.24	57.83
PGSC0003DMT400040233	Potato	mitochondrion	50.85	54.55
Solyc05g006030.2.1	Tomato	cytosol	50.85	54.22
VIT_01s0026g00730.t01	Wine grape	cytosol	51.98	52.57
KRH69484	Soybean	cytosol	50.85	52.33
KRH74672	Soybean	cytosol	50.28	51.74
KRG99257	Soybean	cytosol	46.89	47.7
KRH45741	Soybean	cytosol	46.89	47.16
GSMUA_Achr5P23980_001	Banana	cytosol	32.77	42.34
KXG30786	Sorghum	cytosol	40.11	42.26
Bra000609.1-P	Field mustard	cytosol	37.29	42.04
Bra010130.1-P	Field mustard	nucleus	37.85	41.88
TraesCS7D01G194000.1	Wheat	cytosol	37.29	40.74
Bra035874.1-P	Field mustard	cytosol	37.85	40.12
TraesCS6A01G309500.1	Wheat	cytosol	40.68	40.0
TraesCS7B01G098100.1	Wheat	cytosol	37.29	39.76
GSMUA_Achr9P28200_001	Banana	cytosol	36.72	38.92
TraesCS7A01G192700.1	Wheat	cytosol	36.72	38.92
KXG19676	Sorghum	cytosol	37.29	37.93
Os02t0741700-01	Rice	cytosol	35.03	37.35
TraesCS6B01G339300.1	Wheat	cytosol	37.85	37.22
TraesCS6D01G288900.1	Wheat	cytosol	37.85	37.22
Zm00001d017998_P001	Maize	cytosol	36.16	36.99
GSMUA_Achr3P06040_001	Banana	cytosol	36.72	36.93
GSMUA_Achr9P18270_001	Banana	cytosol	37.85	36.81
Os06t0236300-01	Rice	cytosol	38.98	36.51
HORVU6Hr1G076380.4	Barley	cytosol	35.03	36.05
EER96686	Sorghum	cytosol	36.16	35.75
Zm00001d052277_P001	Maize	cytosol	33.9	35.71
OQU80443	Sorghum	cytosol	37.29	35.68
Zm00001d032324_P001	Maize	cytosol	36.72	34.95
Zm00001d037251_P001	Maize	cytosol	35.59	34.81
Zm00001d020348_P001	Maize	cytosol	36.16	34.78
TraesCS5A01G200100.1	Wheat	cytosol	38.42	34.52
Zm00001d044783_P001	Maize	cytosol	33.9	34.48
TraesCS5D01G205700.1	Wheat	cytosol	38.42	34.0
TraesCS5B01G198500.1	Wheat	cytosol	38.42	34.0
HORVU5Hr1G059690.7	Barley	nucleus	38.98	33.99
Os09t0381600-01	Rice	cytosol	39.55	33.65
Os08t0420700-01	Rice	cytosol, nucleus, plastid	35.59	33.33
TraesCS2D01G082500.1	Wheat	cytosol	36.72	33.33
TraesCS5B01G198400.1	Wheat	cytosol	37.29	33.0
TraesCS2A01G084700.1	Wheat	cytosol	37.29	33.0
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	34.46	32.97
TraesCS2B01G099400.1	Wheat	cytosol	37.29	32.67
TraesCS2D01G082600.1	Wheat	cytosol	37.29	32.67
HORVU7Hr1G039360.7	Barley	cytosol	31.64	32.18
HORVU7Hr1G039390.1	Barley	cytosol	29.94	31.93
TraesCS2D01G082300.1	Wheat	cytosol	35.59	31.5
TraesCS2A01G084400.1	Wheat	cytosol	35.59	31.5
TraesCS2A01G084600.1	Wheat	cytosol	35.03	31.31
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	35.03	31.16
TraesCS2B01G099100.1	Wheat	nucleus	35.03	31.0
TraesCS2A01G084500.1	Wheat	cytosol	35.59	30.73
HORVU2Hr1G013820.4	Barley	cytosol	35.03	30.69
TraesCS2B01G099200.1	Wheat	nucleus	34.46	30.5
Bra037835.1-P	Field mustard	nucleus	31.07	30.39
Bra031842.1-P	Field mustard	nucleus	28.81	26.7
Bra024434.1-P	Field mustard	nucleus	24.86	26.67
TraesCS2B01G098900.1	Wheat	nucleus, plastid	24.29	23.76

Protein Annotations

EnsemblPlants:Bra027820.1	EnsemblPlants:Bra027820.1-P	EnsemblPlantsGene:Bra027820	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF4
PFAM:PF14009	UniParc:UPI0002542745	UniProt:M4EGA6	MapMan:35.2	:	:

Description

AT1G60010 (E=2e-079) | unknown protein

Coordinates

chrA09:+:9008022..9008743

Molecular Weight (calculated)

19943.8 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.773

Length

177 amino acids

Sequence
(BLAST)

001: MGNCQAVDAA ALVVQHPDGK LDRYYGPVPV AEIMRMYPGH YVSLIIPLPE TNVPATTTKT VEDDKSERRV VKFTRVKLLR PTESLVLGHA YRLITSQEVM
101: KVLRAKKYAK TKKHQRETTE EKNPTSLEKK VAEESDKNQN QNMETNDEKQ RAVLTSSGSS KSKTWRPSLQ SISEATS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.