Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 86.5 | 86.93 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 86.0 | 86.0 |
| TraesCS2A01G084400.1 | Wheat | cytosol | 84.0 | 84.0 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 78.5 | 80.51 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 75.0 | 74.26 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 36.0 | 52.55 |
| OQU80443 | Sorghum | cytosol | 48.5 | 52.43 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 39.5 | 48.77 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 46.0 | 48.68 |
| Zm00001d032324_P001 | Maize | cytosol | 44.0 | 47.31 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 39.0 | 46.71 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 41.5 | 46.11 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 40.5 | 44.51 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 40.5 | 43.78 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 38.5 | 43.75 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 43.5 | 43.5 |
| KRH45741 | Soybean | cytosol | 36.5 | 41.48 |
| KRG99257 | Soybean | cytosol | 36.0 | 41.38 |
| AT5G50090.1 | Thale cress | cytosol | 32.5 | 40.88 |
| KRH74672 | Soybean | cytosol | 35.0 | 40.7 |
| KRH69484 | Soybean | cytosol | 34.5 | 40.12 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 33.0 | 40.0 |
| Solyc05g006030.2.1 | Tomato | cytosol | 33.0 | 39.76 |
| AT5G62900.1 | Thale cress | cytosol | 31.5 | 39.13 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 34.0 | 38.86 |
| Bra000609.1-P | Field mustard | cytosol | 30.5 | 38.85 |
| CDY21433 | Canola | cytosol | 30.0 | 38.22 |
| KRH63480 | Soybean | cytosol | 33.0 | 38.15 |
| CDX84364 | Canola | cytosol | 30.5 | 38.12 |
| Bra010130.1-P | Field mustard | nucleus | 30.5 | 38.12 |
| CDY00334 | Canola | nucleus | 30.5 | 38.12 |
| KRH57030 | Soybean | cytosol | 33.5 | 37.22 |
| KRH54436 | Soybean | cytosol | 33.5 | 37.02 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 34.0 | 36.96 |
| KRH03351 | Soybean | cytosol | 33.5 | 36.81 |
| PGSC0003DMT400083024 | Potato | cytosol | 29.5 | 36.65 |
| AT1G60010.1 | Thale cress | cytosol | 31.5 | 36.42 |
| Bra027820.1-P | Field mustard | cytosol | 31.5 | 35.59 |
| Solyc06g071320.2.1 | Tomato | cytosol | 27.5 | 35.48 |
| CDY69854 | Canola | cytosol | 31.0 | 35.23 |
| CDY70563 | Canola | cytosol | 31.5 | 35.2 |
| CDY30923 | Canola | cytosol | 31.0 | 35.03 |
| CDY24507 | Canola | cytosol | 30.5 | 34.86 |
| Bra035410.1-P | Field mustard | cytosol | 30.5 | 34.86 |
| Bra035874.1-P | Field mustard | cytosol | 29.0 | 34.73 |
| Solyc03g114020.2.1 | Tomato | cytosol | 32.0 | 34.22 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 38.0 | 33.63 |
| CDY07805 | Canola | nucleus | 27.5 | 33.13 |
| CDX87268 | Canola | cytosol | 26.5 | 33.12 |
| PGSC0003DMT400063216 | Potato | cytosol | 30.5 | 32.62 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 27.0 | 32.53 |
| CDY34887 | Canola | cytosol | 27.0 | 32.53 |
| Bra031717.1-P | Field mustard | cytosol | 27.0 | 32.53 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G082300.1 | EnsemblPlantsGene:TraesCS2D01G082300 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF13 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:35531835..35532581
Molecular Weight (calculated)
22171.3 Da
IEP (calculated)
10.782
GRAVY (calculated)
-0.899
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHPGDG KVERLHWPAT AADVMRRNPG HYVALVVLHH VDSEPGPAVA GERGGARITK IKLLKPKDTL LLGQVYRLIT SQEVTKAVQT
101: RKQERMRGCD EAIEQQRPRL HRRRHLPRLT GDDAATAASG EQRQPADHQE RKRLEKDRHH RSITAAPGRG RGRGGHWRPA LQSITESSSS GHTDCEDTRK
101: RKQERMRGCD EAIEQQRPRL HRRRHLPRLT GDDAATAASG EQRQPADHQE RKRLEKDRHH RSITAAPGRG RGRGGHWRPA LQSITESSSS GHTDCEDTRK
001: MGNCQAVDTA RVVIQHPNGK EEKLSCPVSA SYVMKMNPGH CVSLLISTTA LSSASSGHGG PLRLTRIKLL RPTDTLVLGH VYRLITTKEV MKGLMAKKCS
101: KLKKESKGSD DKLEMVKAIN STKLDNEDQL QMKKQEKERS RISRSWQPSL QSISEGGSS
101: KLKKESKGSD DKLEMVKAIN STKLDNEDQL QMKKQEKERS RISRSWQPSL QSISEGGSS
Arabidopsis Description
At5g50090 [Source:UniProtKB/TrEMBL;Acc:Q9FGA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.