Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 55.29 | 94.63 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 93.73 | 93.73 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 79.02 | 87.23 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 35.69 | 59.09 |
| OQU81760 | Sorghum | nucleus | 48.43 | 57.98 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 33.92 | 57.28 |
| Zm00001d025667_P001 | Maize | cytosol | 50.0 | 52.25 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 14.31 | 26.45 |
| CDY17403 | Canola | nucleus | 14.31 | 26.45 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 13.73 | 25.09 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.49 | 23.58 |
| CDY24192 | Canola | plastid | 13.33 | 22.44 |
| GSMUA_Achr10P... | Banana | cytosol | 21.57 | 21.83 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 22.75 | 21.6 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 22.75 | 21.01 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 23.92 | 20.54 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 23.33 | 20.0 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 14.9 | 19.0 |
| CDX94330 | Canola | nucleus | 18.24 | 18.94 |
| AT5G56210.1 | Thale cress | nucleus | 18.82 | 18.86 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 14.71 | 18.8 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 15.1 | 18.33 |
| CDX89333 | Canola | nucleus | 17.65 | 18.18 |
| Bra026434.1-P | Field mustard | nucleus | 17.65 | 18.18 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 15.69 | 18.1 |
| CDX82542 | Canola | plastid | 15.69 | 18.06 |
| PGSC0003DMT400022426 | Potato | nucleus | 20.39 | 17.75 |
| KRH56393 | Soybean | cytosol | 20.2 | 17.55 |
| KRH62532 | Soybean | endoplasmic reticulum | 20.0 | 17.44 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 20.78 | 17.26 |
| AT4G26455.1 | Thale cress | nucleus | 16.08 | 16.77 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 16.86 | 16.6 |
| PGSC0003DMT400056956 | Potato | nucleus | 19.41 | 16.56 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G332000.1 | EnsemblPlantsGene:TraesCS2D01G332000 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF7 | SEG:seg |
| MapMan:20.4.2.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:424649164..424651448
Molecular Weight (calculated)
57444.3 Da
IEP (calculated)
4.983
GRAVY (calculated)
-0.506
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MDELDFTTRG RDFGQQPARL LLDSSLIGIR GGNLTELQCT QGKIASSLNR AAWEQNPSGF LPKSPFDHYA VARKLALPCL PSQGKYLVHT SPRKACRPRR
101: WRRVGRELRV NPLDLDVNFL VLATGYSLGI VSKNLDQRTL SPSFIASKCL VGSMIDGHRN GKRIRVKDFG LGGVGCKTRR WAIRTRGEAS FGESYLMASD
201: AGDAFSNNRH QTMSLSYDGS QSEDRQSEEV QSAYKKFSAG DEDVIRGFVN LDETEEQNEE NEWSWVPQEE DPLAESASSL EKAQEVLEKF FKKNEDLETE
301: MLKLSELGKE FVAEDSHDGN IGLPYIGADV LGMNQKMECL ELKLKEASDT ITEKDSRLSE LQSLINSAHT PTLQTEPVNV DELETELESH LQDKIEAEIQ
401: CLVMVKARQN WQARAEDQIA LEEHKLSAGE DTRMLLKLQD TEKKIVMLKE QVDRLEAHEK ELSVTTEVLR MQSKTFKIGL FGLLQLIMLC LSLKMFFAQD
501: SARFGDLVPT
101: WRRVGRELRV NPLDLDVNFL VLATGYSLGI VSKNLDQRTL SPSFIASKCL VGSMIDGHRN GKRIRVKDFG LGGVGCKTRR WAIRTRGEAS FGESYLMASD
201: AGDAFSNNRH QTMSLSYDGS QSEDRQSEEV QSAYKKFSAG DEDVIRGFVN LDETEEQNEE NEWSWVPQEE DPLAESASSL EKAQEVLEKF FKKNEDLETE
301: MLKLSELGKE FVAEDSHDGN IGLPYIGADV LGMNQKMECL ELKLKEASDT ITEKDSRLSE LQSLINSAHT PTLQTEPVNV DELETELESH LQDKIEAEIQ
401: CLVMVKARQN WQARAEDQIA LEEHKLSAGE DTRMLLKLQD TEKKIVMLKE QVDRLEAHEK ELSVTTEVLR MQSKTFKIGL FGLLQLIMLC LSLKMFFAQD
501: SARFGDLVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.