Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77350.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT1G77350.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT1G77350.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G304300.1 | Wheat | extracellular | 100.0 | 100.0 |
| TraesCS1B01G314800.1 | Wheat | extracellular | 97.52 | 97.52 |
| Zm00001d040435_P003 | Maize | extracellular | 91.74 | 91.74 |
| OQU86697 | Sorghum | extracellular | 91.74 | 91.74 |
| HORVU1Hr1G069080.4 | Barley | extracellular | 76.03 | 91.09 |
| Os05t0486200-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 86.78 | 86.07 |
| VIT_19s0085g00270.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 73.55 | 73.55 |
| PGSC0003DMT400015485 | Potato | endoplasmic reticulum, extracellular, vacuole | 72.73 | 72.73 |
| Solyc11g005000.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 66.12 | 70.18 |
| CDY08189 | Canola | extracellular | 67.77 | 67.77 |
| Bra016411.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 67.77 | 67.77 |
| Bra017936.1-P | Field mustard | extracellular | 67.77 | 67.77 |
| KRH53288 | Soybean | endoplasmic reticulum, extracellular, vacuole | 69.42 | 67.2 |
| CDY01319 | Canola | extracellular | 66.94 | 66.94 |
| CDX96580 | Canola | endoplasmic reticulum, extracellular, vacuole | 66.94 | 66.94 |
| Bra012289.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 65.29 | 65.29 |
| AT1G77350.1 | Thale cress | extracellular | 65.29 | 64.75 |
| CDY00395 | Canola | extracellular | 65.29 | 64.75 |
| CDY38817 | Canola | extracellular | 64.46 | 64.46 |
| KRH64617 | Soybean | extracellular | 70.25 | 61.15 |
| CDY04659 | Canola | extracellular | 28.93 | 55.56 |
| GSMUA_Achr10P... | Banana | extracellular | 75.21 | 49.46 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G303800.1 | EnsemblPlantsGene:TraesCS1D01G303800 | InterPro:KRTCAP2 | PANTHER:PTHR32001 | PFAM:PF09775 | SEG:seg |
| SignalP:SignalP-TM | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:401673459..401676703
Molecular Weight (calculated)
13072.4 Da
IEP (calculated)
9.635
GRAVY (calculated)
0.864
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTGRSMLL SLLLFAVTLS LLEMYRGWFA ASELKTIAGG FVSSLLFLLL LTFIGNYQEA SGVRTGWGAV VVAQLVALIV AGTVHRVCIT TCFLFSAGIL
101: YEVDKLSGMI LARSESKARR Y
101: YEVDKLSGMI LARSESKARR Y
001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH
101: LYEVNKISGY MLSKTESKSK RH
Arabidopsis Description
At1g77350/F2P24_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVX3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.