Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77350.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015485 | Potato | endoplasmic reticulum, extracellular, vacuole | 81.82 | 81.82 |
| Solyc11g005000.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 76.03 | 80.7 |
| KRH53288 | Soybean | endoplasmic reticulum, extracellular, vacuole | 82.64 | 80.0 |
| Bra016411.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 76.86 | 76.86 |
| CDX96580 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.86 | 76.86 |
| CDY38817 | Canola | extracellular | 76.03 | 76.03 |
| AT1G77350.1 | Thale cress | extracellular | 75.21 | 74.59 |
| Bra017936.1-P | Field mustard | extracellular | 74.38 | 74.38 |
| CDY08189 | Canola | extracellular | 74.38 | 74.38 |
| CDY01319 | Canola | extracellular | 73.55 | 73.55 |
| TraesCS1D01G303800.1 | Wheat | extracellular | 73.55 | 73.55 |
| TraesCS1A01G304300.1 | Wheat | extracellular | 73.55 | 73.55 |
| Bra012289.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 72.73 | 72.73 |
| Zm00001d040435_P003 | Maize | extracellular | 72.73 | 72.73 |
| TraesCS1B01G314800.1 | Wheat | extracellular | 72.73 | 72.73 |
| OQU86697 | Sorghum | extracellular | 72.73 | 72.73 |
| KRH64617 | Soybean | extracellular | 83.47 | 72.66 |
| CDY00395 | Canola | extracellular | 72.73 | 72.13 |
| Os05t0486200-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 70.25 | 69.67 |
| HORVU1Hr1G069080.4 | Barley | extracellular | 56.2 | 67.33 |
| CDY04659 | Canola | extracellular | 32.23 | 61.9 |
| GSMUA_Achr10P... | Banana | extracellular | 78.51 | 51.63 |
Protein Annotations
| EntrezGene:100266739 | wikigene:100266739 | MapMan:35.2 | ProteinID:CBI24190 | ProteinID:CBI24190.3 | UniProt:D7T0X0 |
| EMBL:FN595503 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:KRTCAP2 | EntrezGene:LOC100266739 |
| wikigene:LOC100266739 | PFAM:PF09775 | PANTHER:PTHR32001 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00015CC367 |
| ArrayExpress:VIT_19s0085g00270 | EnsemblPlantsGene:VIT_19s0085g00270 | EnsemblPlants:VIT_19s0085g00270.t01 | RefSeq:XP_002264665 | RefSeq:XP_002264665.1 | RefSeq:XP_010645140.1 |
| RefSeq:XP_010645141.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:22575628..22581723
Molecular Weight (calculated)
13165.5 Da
IEP (calculated)
8.863
GRAVY (calculated)
0.817
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSGSSMLY SFLLFVVILS LQEMYRGKLA SSELFTILGG FISSLIFLVL LTFIGNIQET CGMRTGWGAV ILAEAVALIA ASTVHRVCIT TCFLFSAGLL
101: YELNKLSGMM LSKSESKSRR Y
101: YELNKLSGMM LSKSESKSRR Y
001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH
101: LYEVNKISGY MLSKTESKSK RH
Arabidopsis Description
At1g77350/F2P24_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVX3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.