CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 5
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH31520
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77350.1	KRG97393	AT1G27300.1	21798944
AT1G77350.1	KRH31520	AT1G27300.1	21798944
AT1G77350.1	KRH76090	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53288	Soybean	endoplasmic reticulum, extracellular, vacuole	87.77	97.6
VIT_19s0085g00270.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	72.66	83.47
PGSC0003DMT400015485	Potato	endoplasmic reticulum, extracellular, vacuole	70.5	80.99
Solyc11g005000.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	65.47	79.82
Bra016411.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.47	75.21
CDX96580	Canola	endoplasmic reticulum, extracellular, vacuole	64.75	74.38
Bra017936.1-P	Field mustard	extracellular	63.31	72.73
CDY08189	Canola	extracellular	63.31	72.73
CDY38817	Canola	extracellular	63.31	72.73
AT1G77350.1	Thale cress	extracellular	63.31	72.13
CDY00395	Canola	extracellular	63.31	72.13
CDY01319	Canola	extracellular	62.59	71.9
HORVU1Hr1G069080.4	Barley	extracellular	51.8	71.29
Bra012289.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	61.87	71.07
OQU86697	Sorghum	extracellular	61.15	70.25
TraesCS1A01G304300.1	Wheat	extracellular	61.15	70.25
TraesCS1D01G303800.1	Wheat	extracellular	61.15	70.25
Zm00001d040435_P003	Maize	extracellular	61.15	70.25
TraesCS1B01G314800.1	Wheat	extracellular	60.43	69.42
CDY04659	Canola	extracellular	30.22	66.67
Os05t0486200-01	Rice	endoplasmic reticulum, extracellular, plasma membrane	58.27	66.39
GSMUA_Achr10P...	Banana	extracellular	62.59	47.28

Protein Annotations

EMBL:ACUP02002770	EnsemblPlants:KRH64617	EnsemblPlantsGene:GLYMA_04G246100	EntrezGene:100797444	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:KRTCAP2	PANTHER:PTHR32001	PFAM:PF09775	ProteinID:KRH64617	ProteinID:KRH64617.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000233A220	UniProt:I1JZ21	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:51369802..51373530

Molecular Weight (calculated)

14854.3 Da

IEP (calculated)

9.591

GRAVY (calculated)

0.678

Length

139 amino acids

Sequence
(BLAST)

001: MKFGSRSLEL GFLAMAGSGS SMLYSFLLFT VILSLQEMYR GKLASSELYT ILGGFVSSLL FLVLLTFIGN FQETIGARTG WGAVIVAEAV ALIAASTVHR
101: VCITTCFLFS AALLYEVNKI SGSALSTSDS RTKKQSGRA

Best Arabidopsis Sequence Match ( AT1G77350.2 )
(BLAST)

001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH

Arabidopsis Description

At1g77350/F2P24_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVX3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.