Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77350.1 | CDX84933 | AT1G27300.1 | 21798944 |
| AT1G77350.1 | CDY03907 | AT1G27300.1 | 21798944 |
| AT1G77350.1 | CDY15722 | AT1G27300.1 | 21798944 |
| AT1G77350.1 | CDY27605 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017936.1-P | Field mustard | extracellular | 80.95 | 42.15 |
| CDY08189 | Canola | extracellular | 80.95 | 42.15 |
| CDX96580 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.19 | 39.67 |
| CDY38817 | Canola | extracellular | 76.19 | 39.67 |
| CDY01319 | Canola | extracellular | 73.02 | 38.02 |
| CDY00395 | Canola | extracellular | 71.43 | 36.89 |
| AT1G77350.1 | Thale cress | extracellular | 66.67 | 34.43 |
| KRH53288 | Soybean | endoplasmic reticulum, extracellular, vacuole | 65.08 | 32.8 |
| HORVU1Hr1G069080.4 | Barley | extracellular | 52.38 | 32.67 |
| VIT_19s0085g00270.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 61.9 | 32.23 |
| PGSC0003DMT400015485 | Potato | endoplasmic reticulum, extracellular, vacuole | 61.9 | 32.23 |
| Solyc11g005000.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 55.56 | 30.7 |
| KRH64617 | Soybean | extracellular | 66.67 | 30.22 |
| OQU86697 | Sorghum | extracellular | 57.14 | 29.75 |
| Zm00001d040435_P003 | Maize | extracellular | 57.14 | 29.75 |
| TraesCS1A01G304300.1 | Wheat | extracellular | 55.56 | 28.93 |
| TraesCS1D01G303800.1 | Wheat | extracellular | 55.56 | 28.93 |
| TraesCS1B01G314800.1 | Wheat | extracellular | 53.97 | 28.1 |
| Os05t0486200-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 52.38 | 27.05 |
| GSMUA_Achr10P... | Banana | extracellular | 57.14 | 19.57 |
Protein Annotations
| EnsemblPlants:CDY04659 | EnsemblPlantsGene:GSBRNA2T00119259001 | GO:A0A078EVN2 | InterPro:KRTCAP2 | PANTHER:PTHR32001 | PFAM:PF09775 |
| ProteinID:CDY04659 | ProteinID:CDY04659.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE3E2D | MapMan:35.2 |
Description
BnaC05g16970D
Coordinates
chrLK031956:+:651131..651949
Molecular Weight (calculated)
6802.5 Da
IEP (calculated)
6.654
GRAVY (calculated)
0.963
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGVGTSMLG SVLLFTVVLS LQEVYREKLA SSELYTILGG FTRSLLFLFS LSLSLEISKS LLA
001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH
101: LYEVNKISGY MLSKTESKSK RH
Arabidopsis Description
At1g77350/F2P24_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVX3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.