Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77350.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G303800.1 | Wheat | extracellular | 86.07 | 86.78 |
| TraesCS1B01G314800.1 | Wheat | extracellular | 86.07 | 86.78 |
| TraesCS1A01G304300.1 | Wheat | extracellular | 86.07 | 86.78 |
| Zm00001d040435_P003 | Maize | extracellular | 85.25 | 85.95 |
| OQU86697 | Sorghum | extracellular | 85.25 | 85.95 |
| HORVU1Hr1G069080.4 | Barley | extracellular | 67.21 | 81.19 |
| VIT_19s0085g00270.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 69.67 | 70.25 |
| AT1G77350.1 | Thale cress | extracellular | 69.67 | 69.67 |
| CDY01319 | Canola | extracellular | 68.85 | 69.42 |
| Bra012289.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 67.21 | 67.77 |
| Solyc11g005000.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 63.11 | 67.54 |
| CDY00395 | Canola | extracellular | 67.21 | 67.21 |
| CDY08189 | Canola | extracellular | 66.39 | 66.94 |
| Bra017936.1-P | Field mustard | extracellular | 66.39 | 66.94 |
| Bra016411.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 66.39 | 66.94 |
| PGSC0003DMT400015485 | Potato | endoplasmic reticulum, extracellular, vacuole | 65.57 | 66.12 |
| CDX96580 | Canola | endoplasmic reticulum, extracellular, vacuole | 65.57 | 66.12 |
| CDY38817 | Canola | extracellular | 64.75 | 65.29 |
| KRH53288 | Soybean | endoplasmic reticulum, extracellular, vacuole | 65.57 | 64.0 |
| KRH64617 | Soybean | extracellular | 66.39 | 58.27 |
| CDY04659 | Canola | extracellular | 27.05 | 52.38 |
| GSMUA_Achr10P... | Banana | extracellular | 70.49 | 46.74 |
Protein Annotations
| EnsemblPlants:Os05t0486200-01 | EnsemblPlantsGene:Os05g0486200 | EntrezGene:4339143 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 | InterPro:KRTCAP2 | PANTHER:PTHR32001 |
| PFAM:PF09775 | ProteinID:BAF17792.1 | ProteinID:BAS94618.1 | RefSeq:XP_015637783.1 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0000E1254A | UniProt:Q0DH81 | MapMan:35.2 | : | : |
Description
Protein of unknown function KRTCAP2 domain containing protein. (Os05t0486200-01)
Coordinates
chr5:-:23907885..23910582
Molecular Weight (calculated)
13122.3 Da
IEP (calculated)
9.252
GRAVY (calculated)
0.740
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGGRSMA LSLLLFAVTL SLLEMYRGRF ASSELMTIAG GFVSSLLFLF LLTFIGNYQE ANGVKTGWGA VVVAELTALI VAGTVHRVCI TTCFLFSAGF
101: LYEVDKLSGM ILAKSESKAR RH
101: LYEVDKLSGM ILAKSESKAR RH
001: MAGAVGTSML GSLIVFTVIL SLQEIYRGKL ASSELFTILG GFTSSLLFLF SLTFIGNFQE SSGIKSGWGA VILAEIIALI AAGTVHRVCI TTCFLFSAGL
101: LYEVNKISGY MLSKTESKSK RH
101: LYEVNKISGY MLSKTESKSK RH
Arabidopsis Description
At1g77350/F2P24_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVX3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.